PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016652842.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 317aa    MW: 35806.8 Da    PI: 6.5093
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016652842.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-12181206126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_016652842.1 181 YQPDICKDYKETGYCGYGDSCKFMHD 206
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9177211IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7180207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878180208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12181211IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10181206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.4E-13243304IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139203.4E-8256297No hitNo description
SuperFamilySSF578501.06E-12256299No hitNo description
PROSITE profilePS5008910.616257295IPR001841Zinc finger, RING-type
CDDcd001623.76E-7257294No hitNo description
SMARTSM001848.5E-5257294IPR001841Zinc finger, RING-type
PROSITE patternPS005180272281IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MADSGGNAEP GEVCNFFRKP LKKQNIRKRR VDEDEEDDDS KSGGTSLPSQ RKASKLDGKL  60
YFSSEPAKCS TLDSSAIFEF KSSKEIQVEH DSGATATLET ETDFSRDARA VRERVLKQAE  120
EALKGKSKVT GNDKLYKGIH GYTDYKAGFR RELTVASEKA GGSHGPLRAS AHIRATTRFD  180
YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW DEAEKIRKRN LALGEDDVDQ  240
TDEDDEDDED GSLPFACFIC RQPFVDPVVT KCNHYFCEHC ALKHHSKNKK CFVCEKPTLG  300
IFNTAHEIRK RMAAEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-6781312104317RING finger protein 113A
5z58_M1e-6781312104317RING finger protein 113A
6ff4_t1e-6781312104317RING finger protein 113A
6ff7_t1e-6781312104317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016652842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245216.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_016652842.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_016652843.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-164C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A251NX620.0A0A251NX62_PRUPE; Uncharacterized protein
STRINGXP_008245216.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-160C3H family protein