PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016652354.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 407aa    MW: 43654.3 Da    PI: 7.5823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016652354.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-19196245255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa+a+++a+++++g
  XP_016652354.1 196 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAAQAYDEAALRFRG 245
                     7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.8E-35196259IPR001471AP2/ERF domain
PfamPF008472.5E-13196245IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-22196254IPR016177DNA-binding domain
PROSITE profilePS5103225.409196253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-32196254IPR001471AP2/ERF domain
PRINTSPR003673.0E-11197208IPR001471AP2/ERF domain
CDDcd000186.73E-15204255No hitNo description
PRINTSPR003673.0E-11219235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MCVLKVAEKD QRAARHSNTG TEHSIEEWLY EPLVFSQQLQ QQQRQRGGGS GGGGGGSEIL  60
ASAGSSMLLR LDREREMSAM VSALAHVVAG DEELAAAESS LVINRQSEDV GGGLISSSVG  120
GSDSGTKRGR EEEEGCGSQS VTRLCRAFGE FPRQSSSPVL GVSAEGSSTT PPTQTAFPPS  180
TFVYSATQIA EPIRRRYRGV RQRPWGKWAA EIRDPFKAAR VWLGTFETAE AAAQAYDEAA  240
LRFRGNKAKL NFPENVRLRT PIADSPATQL TISAPSNTLL SVATSTEPIV HSQAFQSMQH  300
SSHEASRNLL SYCKPVDVQR QQPMSLYDQM LLSSPATPSV SSSSSSPLAS SVSSSSSSPP  360
PPAFSSLFWT QSSLPLRPAT SDQNSTAADF QSKQWSSSSH YSAPFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22195256163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016652354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695580.0KT369558.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652354.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X1
TrEMBLM5X8N30.0M5X8N3_PRUPE; Uncharacterized protein
STRINGXP_008244623.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-28ERF family protein