PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016652255.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 510aa MW: 55923.3 Da PI: 7.8825 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_016652255.1 24 RERWTHEEHNKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.415 | 19 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 21 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.3E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.85E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MEPHSSREDL VIKARKPYTI TKQRERWTHE EHNKFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAHVNG VPIGQSIGID IPPPRPKRKP CNPYPRKSSS AASTCAALHV 120 GAKVGKLLSS ASSSCYKQVV DLEKEPLHER PFGEEKANNA ENQVANWAEV FTLLQDGHCS 180 SVSSANNNSI PSQVALGNAC TLRDATNESH VTINLKGNQN LKKIDAKMIV GDNGTSGAPK 240 SGNTNNAFHK ELVQGEKISS LIVSSLLQNP AAHAVASSTA AFWPYANAKN RKDPPSMAAI 300 AAATVTAATA WSAVHRLLPR QTDFRCSPIS MTGVPVPSMD TGQAPPAKRE KGESSLQIPS 360 LQDQQLDSRH TEAVEAQHSN IAKANTDDEK DVASTEEVHD SNHAKSRKQQ VDRSLYGSNT 420 PSDSEDETAA IEKNEKGREE LKEPNASHPA AESSQRRCRC VSNMYDSWKE VSEEGRLAFH 480 ALFSRDVLPQ SFSLTQDLKI KGHQNDGMED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016652255.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016652255.1 | 0.0 | PREDICTED: protein LHY-like isoform X1 | ||||
TrEMBL | A0A251QIH8 | 0.0 | A0A251QIH8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20198 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20442 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 6e-69 | circadian clock associated 1 |