PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016651917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 490aa MW: 54551.3 Da PI: 4.8108 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.3 | 1.6e-35 | 105 | 196 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++++++d++l+++isw + gnsfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+YgF+kv++++ weF ++ Fk+gk++ll+k XP_016651917.1 105 FLSKTFDLVDDPSLDSIISWGSGGNSFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKVDTDK---------WEFGNEAFKRGKRHLLKK 190 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+ks XP_016651917.1 191 IQRRKS 196 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.2E-56 | 101 | 194 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.45E-34 | 101 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.4E-37 | 102 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.0E-30 | 105 | 194 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.1E-18 | 105 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.1E-18 | 143 | 155 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 144 | 168 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.1E-18 | 156 | 168 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MNPKDESYPK SPPTSAELNP ENPFRPEMSE PLLGSQSIPS FTSPLMEFEA FCALNPSESS 60 WSSGAFEFDE KAPTATSSFM DAGGAEHVAV PQPLECLQDS PVPPFLSKTF DLVDDPSLDS 120 IISWGSGGNS FVVWDPLEFS RLILPRNFKH NNFSSFVRQL NTYGFRKVDT DKWEFGNEAF 180 KRGKRHLLKK IQRRKSPQSL QVGPSAEAGR PRLEGDIETL RKERSMLMQE VGDLQQEQLG 240 TVHHMKVVKE RLQSAEQRQK QMVSFLSKLL QNPAFLARLQ QKTGQKGIDS PRMKRKFVKQ 300 HQHELGKLGL VAESKPYQFA DVASDELNLS AEPAVMRGVI KTPEEEGEGA SSMGAEDPFQ 360 KGKSVLSPEQ EVNPEYHVCF QEDFGKNKMF PELFSPGIDS MIKQEDIWSM GFDVSAGMSS 420 SSNELWSNLV NYDVPEMGVT SGLLDIWDIG PLHAAGGSGI DKWPADESAF DEPDSQAGQL 480 KVDTSKRIDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-24 | 100 | 199 | 15 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 193 | LKKIQRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016651917.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016651917.1 | 0.0 | PREDICTED: heat stress transcription factor A-3 isoform X3 | ||||
Swissprot | Q8GYY1 | 8e-98 | HSFA3_ARATH; Heat stress transcription factor A-3 | ||||
TrEMBL | A0A251NAB7 | 0.0 | A0A251NAB7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241431.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 2e-97 | heat shock transcription factor A3 |