PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651837.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 336aa    MW: 37951.1 Da    PI: 5.3161
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651837.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.1e-1957110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_016651837.1  57 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110
                     56689************************************************9 PP
2HD-ZIP_I/II131.23.9e-4256148193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+d+ +Lk++yd+lk + ++L++e+e+L +e+k+
  XP_016651837.1  56 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDFGVLKANYDSLKLNYDSLQHENEALVKEIKQ 148
                     69***************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1942114IPR009057Homeodomain-like
PROSITE profilePS5007117.57252112IPR001356Homeobox domain
SMARTSM003896.1E-1855116IPR001356Homeobox domain
PfamPF000463.9E-1657110IPR001356Homeobox domain
CDDcd000864.78E-1657113No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1959117IPR009057Homeodomain-like
PRINTSPR000319.8E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000319.8E-692108IPR000047Helix-turn-helix motif
PfamPF021831.1E-17112154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKRLGSSDSL GAMISICPST EEHSPRNNHV YRRDFHSMLD GLDEEGCVEE GGHVSEKKRR  60
LSVEQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDFGV  120
LKANYDSLKL NYDSLQHENE ALVKEIKQLK SKLQEENTES NNLSVKEEQM VAKDQSNYKV  180
VDHEKSKSPP PPPPGSSVPA TESKELNFES FNNTNNGAVG LEAVSLFPDF KDGSSDSDSS  240
AILNEDNSPN LTISSSGMLQ NHQLMKSPAS TSLKFNCSSS SSPSSSSMNC FQFQKTYHPQ  300
FVKIEEHNFF SSEEACSFFS DEQAPTLQWC CPDQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651837.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651837.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2
SwissprotP466686e-75ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLM5WIS10.0M5WIS1_PRUPE; Uncharacterized protein
STRINGXP_008235150.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.15e-66homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]