PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016651750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 48383.5 Da PI: 8.3241 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.1e-11 | 52 | 77 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_016651750.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77 5799********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.5e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_016651750.1 98 QPECQYYLKTGTCKFGATCKFHHPR 122 799********************96 PP | |||||||
3 | zf-CCCH | 34.3 | 4.1e-11 | 147 | 169 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++Ck++H++ XP_016651750.1 147 ECAYYLRTGQCKFGSTCKYHHPQ 169 7********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 3e-12 | 304 | 330 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_016651750.1 304 PGQPECQFYMKTGDCKFGAVCRFHHPR 330 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 5.9e-13 | 350 | 376 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_016651750.1 350 PGEPLCIFYSRYGICKFGPSCKFDHPM 376 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.267 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-8 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 55 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 56 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-10 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-5 | 101 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-9 | 147 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-4 | 148 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 303 | 330 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-9 | 305 | 330 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-5 | 307 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-5 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 349 | 377 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 349 | 376 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 351 | 376 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 352 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-4 | 354 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWQMNLRSSE TLEPGSYPER TGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQYYLKTGTC KFGATCKFHH 120 PRDKAGIAGR VALNILGYPL RPQNEIECAY YLRTGQCKFG STCKYHHPQP TNMMVSLRGS 180 PVYPTVQSPT TPGQQSYAGG ITNWSRASFI PSPRWQAPSS YAPLIVPQGV VSVPGWSAYS 240 GQIGSVSSPE SQQQPVGNSQ IYGTSRQGEP ENSGSQGTFS PYRSGSIPVG FYALQRENVF 300 PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERLIPTPDCV LSPIGLPLRP GEPLCIFYSR 360 YGICKFGPSC KFDHPMGIFT YNPNASSSAD APARRLLGST SATTSLNLSS EGLVEAGSAN 420 PRRLSLSEPR QIPSGDDNID TED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016651750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016651750.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | M5VZ66 | 0.0 | M5VZ66_PRUPE; Uncharacterized protein | ||||
STRING | XP_008218439.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |