PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016651748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 453aa MW: 49545.9 Da PI: 8.4173 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.2e-11 | 52 | 77 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_016651748.1 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77 5799********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_016651748.1 98 QPECQYYLKTGTCKFGATCKFHHPR 122 799********************96 PP | |||||||
3 | zf-CCCH | 34.2 | 4.2e-11 | 157 | 179 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++Ck++H++ XP_016651748.1 157 ECAYYLRTGQCKFGSTCKYHHPQ 179 7********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.1e-12 | 314 | 340 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_016651748.1 314 PGQPECQFYMKTGDCKFGAVCRFHHPR 340 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 6.1e-13 | 360 | 386 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_016651748.1 360 PGEPLCIFYSRYGICKFGPSCKFDHPM 386 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.267 | 50 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-8 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 55 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-4 | 56 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-10 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 101 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 152 | 180 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-4 | 154 | 179 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 155 | 180 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-9 | 157 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 158 | 178 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 313 | 341 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 313 | 340 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-9 | 315 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-5 | 317 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-5 | 319 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 359 | 387 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 359 | 386 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-10 | 361 | 386 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 362 | 386 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 364 | 384 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWQMNLRSSE TLEPGSYPER TGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQYYLKTGTC KFGATCKFHH 120 PRDKAGIAGR VALNILGYPL RPVRFSVFLS LIQNEIECAY YLRTGQCKFG STCKYHHPQP 180 TNMMVSLRGS PVYPTVQSPT TPGQQSYAGG ITNWSRASFI PSPRWQAPSS YAPLIVPQGV 240 VSVPGWSAYS GQIGSVSSPE SQQQPVGNSQ IYGTSRQGEP ENSGSQGTFS PYRSGSIPVG 300 FYALQRENVF PERPGQPECQ FYMKTGDCKF GAVCRFHHPR ERLIPTPDCV LSPIGLPLRP 360 GEPLCIFYSR YGICKFGPSC KFDHPMGIFT YNPNASSSAD APARRLLGST SATTSLNLSS 420 EGLVEAGSAN PRRLSLSEPR QIPSGDDNID TED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016651748.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016651748.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | M5VZ66 | 0.0 | M5VZ66_PRUPE; Uncharacterized protein | ||||
STRING | XP_008218439.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |