PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651602.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 391aa    MW: 43395.7 Da    PI: 7.2866
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651602.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.29.6e-3428054129
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129
                     +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke++++kg++   vg+kktLvfy grapkgekt+Wvmheyrle
  XP_016651602.1   2 GEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFNNKGKAgclVGMKKTLVFYGGRAPKGEKTNWVMHEYRLE 80 
                     578**************************************85555666****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.4441105IPR003441NAC domain
SuperFamilySSF1019411.03E-372106IPR003441NAC domain
PfamPF023657.0E-17679IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGEKEWYFFC QRDRKYPTGM RTNRATESGY WKATGKDKEI FNNKGKAGCL VGMKKTLVFY  60
GGRAPKGEKT NWVMHEYRLE GKISQYTNLS KAAKDEWVVC RVFHKNMGLK KTNNTPTRMN  120
SFGDHDLLDY SSLPPLMDPT SFNNNIMNNN DNKACGYGDQ DVKPGTNLAS TAPSLSSAKA  180
SSSDDHHAIN NNNYLSYFSI GRSGGQVQKP NYSFQVQPTN SYYQATSLSN PNMLYPHHHH  240
QFPNPNPNPS SVWFQPNPNN SDYFQQGMIR VTNNITTSDH DEDDQAMLRA IAAANNNSNM  300
NNETSSSAAA GFGSSGGLER QCKVEQFSSA PQSMFSLSQD TGISTDINTT EISSSLVSSK  360
QELGSAANNC SSYDQRPSVV PISDIEGLWD F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-31110668166NO APICAL MERISTEM PROTEIN
1ut4_B2e-31110668166NO APICAL MERISTEM PROTEIN
1ut7_A2e-31110668166NO APICAL MERISTEM PROTEIN
1ut7_B2e-31110668166NO APICAL MERISTEM PROTEIN
3swm_A2e-31110671169NAC domain-containing protein 19
3swm_B2e-31110671169NAC domain-containing protein 19
3swm_C2e-31110671169NAC domain-containing protein 19
3swm_D2e-31110671169NAC domain-containing protein 19
3swp_A2e-31110671169NAC domain-containing protein 19
3swp_B2e-31110671169NAC domain-containing protein 19
3swp_C2e-31110671169NAC domain-containing protein 19
3swp_D2e-31110671169NAC domain-containing protein 19
4dul_A2e-31110668166NAC domain-containing protein 19
4dul_B2e-31110668166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981251e-64KF198125.1 Malus hupehensis NAC domain protein (NAC112) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240446.10.0PREDICTED: NAC domain-containing protein 100-like isoform X1
RefseqXP_016651602.10.0PREDICTED: NAC domain-containing protein 77-like isoform X2
TrEMBLA0A251N4940.0A0A251N494_PRUPE; Uncharacterized protein
STRINGXP_008240446.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-68Arabidopsis NAC domain containing protein 87