PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651446.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 831aa    MW: 92329.5 Da    PI: 5.4128
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651446.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.6e-2193148156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_016651446.1  93 KKRYHRHTAHQIQEMENLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 148
                     688999***********************************************998 PP
2START161.28e-512955222206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                     la +  +elvk+  a+ep+W + s    e +n +e+++ f++              +++ea r+s+vv+m++ +lv  +ld + +W e ++    
  XP_016651446.1 295 LAASSVDELVKMCHAGEPLWIRNSeigkEVLNVKEYTRMFPP--WplnlkhhssdqFRTEATRDSAVVIMNSINLVDCFLDAN-KWMELFPsivs 386
                     6788899*****************666666666666666655..15699999**999**************************.*********** PP

                     EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
           START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                     +a+t++vi+ +      g lqlm+aelq+lsplvp R+  f+Ry++q  ++g w+ivd  +ds  ++  +ss+ R ++lpSg+li++++ng+sk+
  XP_016651446.1 387 RAKTVQVIQADpsgqanGSLQLMYAELQVLSPLVPtREAHFLRYCQQnAEEGCWAIVDFPIDSFHDNL-QSSFPRYKRLPSGCLIQDMPNGYSKI 480
                     ***********************************************999****************98.9************************* PP

                     EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     twveh++ +++ +h++l + v sg+a+ga++w+a lqrqce+
  XP_016651446.1 481 TWVEHAEIEEKPVHQILSHYVYSGMAFGAQRWLAILQRQCER 522
                     ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.85E-2082151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-2188155IPR009057Homeodomain-like
PROSITE profilePS5007117.13590150IPR001356Homeobox domain
SMARTSM003895.6E-2091154IPR001356Homeobox domain
PfamPF000462.0E-1893148IPR001356Homeobox domain
CDDcd000863.11E-1993151No hitNo description
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084845.358285525IPR002913START domain
SuperFamilySSF559615.36E-34286524No hitNo description
CDDcd088751.95E-117289521No hitNo description
SMARTSM002344.2E-35294522IPR002913START domain
PfamPF018524.5E-43295522IPR002913START domain
SuperFamilySSF559613.71E-15557718No hitNo description
SuperFamilySSF559613.71E-15754792No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MYGDCQVMST MGGGNVVTSE TLFSSPIQNP NFNFMPSQLP FQPFSSIINP KEENGLLMRG  60
KEEMMESGSG SEQVEEKSGN EQEADQLQQP PKKKRYHRHT AHQIQEMENL FKECPHPDDK  120
QRLKLSQELG LKPRQVKFWF QNRRTQMKAQ QDRSDNVMLR AENDSLKNEN YRLQTALRNI  180
ICPNCGGPSM IADIGLDEQQ LRLENARLRE ELERVCCLSS RYTTERQIQT MAPGDPLMSA  240
SSLDLDMNIY SRHFQDPMTS CGDMIPMPLL PPEVPSHYNE GGVLLDEEKT LAVELAASSV  300
DELVKMCHAG EPLWIRNSEI GKEVLNVKEY TRMFPPWPLN LKHHSSDQFR TEATRDSAVV  360
IMNSINLVDC FLDANKWMEL FPSIVSRAKT VQVIQADPSG QANGSLQLMY AELQVLSPLV  420
PTREAHFLRY CQQNAEEGCW AIVDFPIDSF HDNLQSSFPR YKRLPSGCLI QDMPNGYSKI  480
TWVEHAEIEE KPVHQILSHY VYSGMAFGAQ RWLAILQRQC ERVASLMARN ISDLGVIPSP  540
EARKNLMKLS QRMIRTFCVN MSTSNGQSWT ALSDSPDDTV RITTRKVTDP GQPIGVILSA  600
VSTTWLPYSH FRVFELLRDE HRRAQLDVLS NGNSLHEVAH IANGSHPGNC ISLLRINVAS  660
NSAQNVELML QESCTDESGS LVVYTTMDVD GIQLAMSGED PSCIPLLPLG FVIVPLHPME  720
STCPTPNHLT SSSPDHRQED STATTTTTSN VINSGCLLTV GLQVLASTSP SAKLNLSSVT  780
AINNHLCNSV QQIISALSSS SDTCIAAATT ENGSVGGGAS CSDPTASSPR Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238184.10.0PREDICTED: homeobox-leucine zipper protein HDG5 isoform X2
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLM5WW920.0M5WW92_PRUPE; Uncharacterized protein
STRINGEMJ110500.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]