PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016651445.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 832aa MW: 92457.6 Da PI: 5.4128 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.6e-21 | 93 | 148 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k XP_016651445.1 93 KKRYHRHTAHQIQEMENLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 148 688999***********************************************998 PP | |||||||
2 | START | 161.2 | 8e-51 | 295 | 522 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla.... 77 la + +elvk+ a+ep+W + s e +n +e+++ f++ +++ea r+s+vv+m++ +lv +ld + +W e ++ XP_016651445.1 295 LAASSVDELVKMCHAGEPLWIRNSeigkEVLNVKEYTRMFPP--WplnlkhhssdqFRTEATRDSAVVIMNSINLVDCFLDAN-KWMELFPsivs 386 6788899*****************666666666666666655..15699999**999**************************.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 +a+t++vi+ + g lqlm+aelq+lsplvp R+ f+Ry++q ++g w+ivd +ds ++ +ss+ R ++lpSg+li++++ng+sk+ XP_016651445.1 387 RAKTVQVIQADpsgqanGSLQLMYAELQVLSPLVPtREAHFLRYCQQnAEEGCWAIVDFPIDSFHDNL-QSSFPRYKRLPSGCLIQDMPNGYSKI 480 ***********************************************999****************98.9************************* PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 twveh++ +++ +h++l + v sg+a+ga++w+a lqrqce+ XP_016651445.1 481 TWVEHAEIEEKPVHQILSHYVYSGMAFGAQRWLAILQRQCER 522 ****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.85E-20 | 82 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 88 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 90 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-20 | 91 | 154 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-18 | 93 | 148 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.47E-19 | 93 | 151 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 125 | 148 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.358 | 285 | 525 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.36E-34 | 286 | 524 | No hit | No description |
CDD | cd08875 | 1.93E-117 | 289 | 521 | No hit | No description |
SMART | SM00234 | 4.2E-35 | 294 | 522 | IPR002913 | START domain |
Pfam | PF01852 | 4.5E-43 | 295 | 522 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.79E-14 | 557 | 719 | No hit | No description |
SuperFamily | SSF55961 | 8.79E-14 | 755 | 793 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 832 aa Download sequence Send to blast |
MYGDCQVMST MGGGNVVTSE TLFSSPIQNP NFNFMPSQLP FQPFSSIINP KEENGLLMRG 60 KEEMMESGSG SEQVEEKSGN EQEADQLQQP PKKKRYHRHT AHQIQEMENL FKECPHPDDK 120 QRLKLSQELG LKPRQVKFWF QNRRTQMKAQ QDRSDNVMLR AENDSLKNEN YRLQTALRNI 180 ICPNCGGPSM IADIGLDEQQ LRLENARLRE ELERVCCLSS RYTTERQIQT MAPGDPLMSA 240 SSLDLDMNIY SRHFQDPMTS CGDMIPMPLL PPEVPSHYNE GGVLLDEEKT LAVELAASSV 300 DELVKMCHAG EPLWIRNSEI GKEVLNVKEY TRMFPPWPLN LKHHSSDQFR TEATRDSAVV 360 IMNSINLVDC FLDANKWMEL FPSIVSRAKT VQVIQADPSG QANGSLQLMY AELQVLSPLV 420 PTREAHFLRY CQQNAEEGCW AIVDFPIDSF HDNLQSSFPR YKRLPSGCLI QDMPNGYSKI 480 TWVEHAEIEE KPVHQILSHY VYSGMAFGAQ RWLAILQRQC ERVASLMARN ISDLGVIPSP 540 EARKNLMKLS QRMIRTFCVN MSTSNGQSWT ALSDSPDDTV RITTRKVTDP GQPIGVILSA 600 VSTTWLPYSH FRVFELLRDE HRRAQQLDVL SNGNSLHEVA HIANGSHPGN CISLLRINVA 660 SNSAQNVELM LQESCTDESG SLVVYTTMDV DGIQLAMSGE DPSCIPLLPL GFVIVPLHPM 720 ESTCPTPNHL TSSSPDHRQE DSTATTTTTS NVINSGCLLT VGLQVLASTS PSAKLNLSSV 780 TAINNHLCNS VQQIISALSS SSDTCIAAAT TENGSVGGGA SCSDPTASSP RQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016651445.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016651445.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG5 isoform X3 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | M5WW92 | 0.0 | M5WW92_PRUPE; Uncharacterized protein | ||||
STRING | XP_008238183.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Publications ? help Back to Top | |||
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