PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016651179.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 804aa    MW: 84803.4 Da    PI: 9.4119
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016651179.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08244268226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C+f++r+  C +G +C+F+H+
  XP_016651179.1 244 GEKDCSFYMRNASCMFGTNCRFNHP 268
                     7889********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0031242269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638242270IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5244268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5245269IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MLPSARLLLP AAAAAAPVLY RFYKYLRDEV IRVPQNPPEL SDLDLAILEE IRKLGPALLD  60
KILKDPALLD EFRKIDPAVL HEFRKHDPAI IGKILQSCLK DNKEGEKEAD RSTCSGRETA  120
KENENGNEET DGGGGENKNE NGGEVEKKVV DKERSRSQHY PVRPGAGKGK TARKNRKNNQ  180
VSKDKMKERE GLAAEKPGQA ESKDYSRSGG RKCEKACSLN PGRGEPSVAP ILECNFLGLP  240
IRPGEKDCSF YMRNASCMFG TNCRFNHPDP TAVRESEPPS GYGNGGSASL QGASSSTAAP  300
WSAPRSLNDA PLYVPMVIPH VQIGSWGNAD GVWAQSEAGN KDEASGWTKP AFINENQNDS  360
CKKPSGVDDN KRASWGKADG GSTWTKQDGD ATWNKQGEDS TRNKQDSSSA WNKPAGDSSW  420
SKQAGGSSWC KQADVTAGHE SGGVGNQDNG WKRASSFGGS QSIDGVNGDQ PEDFNNNRSG  480
GNWRGGSGRG NSDRGGFRGG RGFVGRGGDR EEDRGGFGRR WGFGGRGRDR GSFGGRGRSD  540
KGGFGGRGYG GRGRGGYQSG GWSNRNESID NNSSGWSKGA DGAGEGWKRD NGGGSWNQGG  600
GSKNDWQGRN SSGWSSQSSG WNQSDVTKGI GGSGSGWNQT VEAKYTAGTQ DKGTGSHNEM  660
GRSWGNNWKS SDASNGDQSS RWKQSTAAKE VKGNTDQDGG RNKGPSSNAQ AGGWGNQGSG  720
WNKGTGSGFG GGTGEQPSAA VGGQSSDWKQ SSAASGAQSS SWNQSGEAKQ GTDEGAKPTN  780
SWGKAAAASS WGKSSDGGSS KGGW
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016651179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239389.10.0PREDICTED: protein RNA-directed DNA methylation 3-like
RefseqXP_008239392.10.0PREDICTED: protein RNA-directed DNA methylation 3-like
RefseqXP_016651179.10.0PREDICTED: protein RNA-directed DNA methylation 3-like
RefseqXP_016651180.10.0PREDICTED: protein RNA-directed DNA methylation 3-like
RefseqXP_016651181.10.0PREDICTED: protein RNA-directed DNA methylation 3-like
TrEMBLA0A251P9740.0A0A251P974_PRUPE; Uncharacterized protein
STRINGXP_008239389.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.16e-25C3H family protein