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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016650923.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family | WRKY | ||||||||
| Protein Properties | Length: 258aa MW: 29479.1 Da PI: 8.5522 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 77.1 | 2e-24 | 88 | 144 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dgy+WrKYGqK kg+e + sYY Ct++ C+ kkkv rs d++++++ Y+g+Hnhe
XP_016650923.1 88 EDGYSWRKYGQKGEKGNEGSTSYYMCTYPYCKRKKKVGRSL-DGQITQVAYKGTHNHE 144
7****************************************.***************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 7.9E-21 | 82 | 145 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 17.144 | 82 | 146 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 3.01E-18 | 85 | 144 | IPR003657 | WRKY domain |
| SMART | SM00774 | 8.8E-20 | 87 | 145 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 5.5E-18 | 88 | 144 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 258 aa Download sequence Send to blast |
MESHEHLNNN FGAVNSSGTI MENWKRLCAM LQNSNEPPVV VGDLQRIMQE ESIESKQGAP 60 RLKKNFCQVY SSTKMTGAAE SKLVPISEDG YSWRKYGQKG EKGNEGSTSY YMCTYPYCKR 120 KKKVGRSLDG QITQVAYKGT HNHEERKDMN QSLSRSVWEL RGGAPLLSIT PDVLPSIGSS 180 VDNVDHEEPI LHEQKHDHDQ PSHENTNYGK PRQATKAIYS CKNQLDHWSR LTVFSYYFRD 240 RMVLFTHKPR LGDLISCF |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_016650923.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016650923.1 | 0.0 | PREDICTED: WRKY transcription factor SUSIBA2-like isoform X2 | ||||
| STRING | XP_008236523.1 | 1e-158 | (Prunus mume) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38470.1 | 6e-21 | WRKY DNA-binding protein 33 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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