PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650359.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 564aa    MW: 64530 Da    PI: 6.9541
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650359.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32.1e-09509557247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W+  E++ l  +v+q+G g+Wk+I          Rt  ++k++w+++
   XP_016650359.1 509 KKWSSLEEDTLRAGVEQYGVGRWKLILTSNRdifGERTQVDLKDKWRNL 557
                      58****************************9***99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.850.101.1E-5414351IPR001752Kinesin motor domain
SMARTSM001291.1E-1714356IPR001752Kinesin motor domain
PROSITE profilePS5006739.40116346IPR001752Kinesin motor domain
SuperFamilySSF525401.5E-5719353IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF002258.0E-2082168IPR001752Kinesin motor domain
PRINTSPR003802.9E-18111132IPR001752Kinesin motor domain
PfamPF002251.5E-24189341IPR001752Kinesin motor domain
PRINTSPR003802.9E-18207224IPR001752Kinesin motor domain
PROSITE patternPS004110240251IPR019821Kinesin motor domain, conserved site
PRINTSPR003802.9E-18241259IPR001752Kinesin motor domain
PRINTSPR003802.9E-18296317IPR001752Kinesin motor domain
PROSITE profilePS5129410.909503562IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-11504561IPR009057Homeodomain-like
SuperFamilySSF466891.87E-13505559IPR009057Homeodomain-like
SMARTSM007173.7E-6507560IPR001005SANT/Myb domain
CDDcd116605.01E-17509559No hitNo description
PfamPF002491.1E-6509557IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDPATEETSD MAKSENLGLF LRIRPLLQSG VRGDRNPRFR RKSAFEPWFQ KMCLRVKTSR  60
SVTLSPPLAL ERGRTKTEVY DGFSQVFSPD SSQEEVYEKM MRPLVEDFLR GKSGMLAAFG  120
PSGSGKTHTI FGCNSQSGMV PLALQQIFKE TSDSTRSLFI SIFEIRCEGG KEERVFDLSP  180
NGVDLTMHRS TLKGLHEALL RRATSPTNAN SQSSRSQCVI NLRIVDDKSN GEVNDQANDG  240
VLIIVDLAGA EREKGTGNQG VRLLESNFIN KTSMVFCLCL RSLLEHQKNP MKPLEKHFQD  300
SLLTKYLRDY MEGKKRMALI LTVKAGGEDY HNTSCLLKQA TPYMEIKFNN EPSKRRLSPS  360
FVLKGYKEKL EVAEHEIQHL RESNLELEKE LKDHKSQIEV QRLDDDQVAQ EIQRLRESNL  420
ELETELKYLK SLIEVERLAD DQVAEETQRL KESNLEPEKE VKDLKSLIDV QISGDDQWDD  480
SVVEDLPNKN AISPSNEDND RLARRRKGKK WSSLEEDTLR AGVEQYGVGR WKLILTSNRD  540
IFGERTQVDL KDKWRNLTRQ HTHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5oam_K1e-238334779359Kinesin-like protein KIF18A
5ocu_K1e-238334779359Kinesin-like protein KIF18A
5ogc_K1e-238334779359Kinesin-like protein KIF18A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650359.10.0PREDICTED: kinesin-like protein KLP2 isoform X3
SwissprotQ6YU881e-106KN6_ORYSJ; Kinesin-like protein KIN-6
TrEMBLA0A251N4740.0A0A251N474_PRUPE; Kinesin-like protein
STRINGXP_008235205.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-09MYB_related family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Guo L, et al.
    Evaluating the microtubule cytoskeleton and its interacting proteins in monocots by mining the rice genome.
    Ann. Bot., 2009. 103(3): p. 387-402
    [PMID:19106179]