PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650310.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 289aa    MW: 32477 Da    PI: 5.3944
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650310.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.59.7e-121061571159
                     EEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  11 GqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     G K+ +g    r+Y+rCt +   gC+++k+v++ +++p++ ++tY g+H+++
  XP_016650310.1 106 GSKDRRGCYKRRAYFRCTRKydqGCRATKQVQQVQDNPRLYQTTYIGQHTCK 157
                     8899999999********998899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.51891159IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-12105158IPR003657WRKY domain
SuperFamilySSF1182905.49E-12105157IPR003657WRKY domain
SMARTSM007741.5E-11106158IPR003657WRKY domain
PfamPF031061.5E-11106157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGSNHKRLIK ELVEGKKTAA ELQMLLHKPF GDHGSASAEE LVVKIMTSFT ESLSVLAAEK  60
KNPGDGHEDH QSGAFGEVYQ IKPEPSHSHC DDRSSGDSGE SRKVQGSKDR RGCYKRRAYF  120
RCTRKYDQGC RATKQVQQVQ DNPRLYQTTY IGQHTCKSMV PPQMIIGSSD HWESQTVSSE  180
SETPNKQNHD FLGSSAIPIV KQEEYKEGTP TPSDLTDNLS SLETNHLWSD FKDDFALCDP  240
AAMCVSTKMG SDNEDVVSNM YLDMDFVVKS IDFDRDFNFD EVEFPKNSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-1297157969OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650310.10.0PREDICTED: probable WRKY transcription factor 70 isoform X2
TrEMBLM5XHJ00.0M5XHJ0_PRUPE; Uncharacterized protein
STRINGXP_008234170.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-18WRKY DNA-binding protein 70