PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016650274.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 367aa    MW: 40727.8 Da    PI: 7.2563
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016650274.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC+ffa  G C  G+ C F+H+
  XP_016650274.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                    99****6666.*************5 PP
2zf-CCCH22.61.9e-073454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f+++ G C +G+rC++ H+
  XP_016650274.1 34 ICTFYQK-GACAFGSRCRYEHV 54
                    7******.***********997 PP
3zf-CCCH19.32.1e-06148170326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ fa+ G C++G++C+ +Hg
  XP_016650274.1 148 HAICS-FAAAGNCPRGEKCPHIHG 170
                     57899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7326IPR000571Zinc finger, CCCH-type
PfamPF156639.4E-8762No hitNo description
PROSITE profilePS5010314.1082956IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-53253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784145172IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035146171IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.47E-13204278No hitNo description
Gene3DG3DSA:3.30.40.107.4E-10209274IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136391.9E-7213272IPR001841Zinc finger, RING-type
CDDcd001620.00172213273No hitNo description
PROSITE profilePS5008912.445214272IPR001841Zinc finger, RING-type
SMARTSM001841.9E-7214271IPR001841Zinc finger, RING-type
PROSITE patternPS005180238247IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.13301329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507301330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKTT PNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSTNS RQSLAVDSLS MAHPSRTSSS GVALAPGILS ELSASSCPFL PPSKPAWNGS  120
LDDDDYDDNG DNDDDGAGAT RSTRPEDHAI CSFAAAGNCP RGEKCPHIHG DICPSCGKHC  180
LHPYRPMERE EHMKTCEEKQ KQLEALKCSQ EIECSVCLER VLSKPTVAER KFGILSECDH  240
PFCVSCIRNW RSSSPTSGMD VNSALRACPI CRKLSYFVIP SVIWYNTKEE KQEIIDSYKS  300
RLRSIDCKHF DFGNGNCPFG TSCFYKHAYR DGRLEEVALR HLGNEDGQTV IATNIRLSDF  360
LADLHIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016650274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016650274.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X2
SwissprotE0X9N41e-173C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A251Q9780.0A0A251Q978_PRUPE; Uncharacterized protein
STRINGXP_008231272.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-154C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]