PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016649888.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 284aa    MW: 31967.2 Da    PI: 9.6469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016649888.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000231742131155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rR +++ +++  L++l+ +      +K + a++L +A  YI  Lq
  XP_016649888.1 174 RRSQKLSDKITALQKLVSPY-----GKTDTASVLHEASIYIMLLQ 213
                     7999**************99.....9***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.156163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-8174222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-6174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRNALLPSVP SHLYNFGNNI DVQMSNWDAQ MNMNRKLGFC MGSKAFESDN QNSRAGDDFS  60
LPLPLQSSSL LAYQPAYPSG AFRYHDGVSQ QPVLLDKKIS APQFEADFQA TQNARKRPIE  120
VDELGGLVGD KTALNEWNQN KRSKVTNSQQ QWHQQFQETS MQQQNNKKLH APVRRSQKLS  180
DKITALQKLV SPYGKTDTAS VLHEASIYIM LLQEQIQNLL RMFSSSYKNA AVLHTQECGG  240
RQMLDLRSKG LCLVPVSVTQ KVTMEEGVDR ASTSRKIVIA NNLY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016649888.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649887.10.0PREDICTED: transcription factor bHLH111-like isoform X2
RefseqXP_016649888.10.0PREDICTED: transcription factor bHLH111-like isoform X2
TrEMBLM5X2390.0M5X239_PRUPE; Uncharacterized protein
STRINGXP_008233662.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-21bHLH family protein