PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016649887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 31967.2 Da PI: 9.6469 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.7 | 0.00023 | 174 | 213 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L +A YI Lq XP_016649887.1 174 RRSQKLSDKITALQKLVSPY-----GKTDTASVLHEASIYIMLLQ 213 7999**************99.....9***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.156 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-8 | 174 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-6 | 174 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MRNALLPSVP SHLYNFGNNI DVQMSNWDAQ MNMNRKLGFC MGSKAFESDN QNSRAGDDFS 60 LPLPLQSSSL LAYQPAYPSG AFRYHDGVSQ QPVLLDKKIS APQFEADFQA TQNARKRPIE 120 VDELGGLVGD KTALNEWNQN KRSKVTNSQQ QWHQQFQETS MQQQNNKKLH APVRRSQKLS 180 DKITALQKLV SPYGKTDTAS VLHEASIYIM LLQEQIQNLL RMFSSSYKNA AVLHTQECGG 240 RQMLDLRSKG LCLVPVSVTQ KVTMEEGVDR ASTSRKIVIA NNLY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016649887.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016649887.1 | 0.0 | PREDICTED: transcription factor bHLH111-like isoform X2 | ||||
Refseq | XP_016649888.1 | 0.0 | PREDICTED: transcription factor bHLH111-like isoform X2 | ||||
TrEMBL | M5X239 | 0.0 | M5X239_PRUPE; Uncharacterized protein | ||||
STRING | XP_008233662.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 2e-21 | bHLH family protein |