PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648794.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 797aa    MW: 89015.1 Da    PI: 4.6518
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648794.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.9e-08219238525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+ffa+ G+C +G +CkF H
  XP_016648794.1 219 ICDFFAK-GWCIRGTSCKFVH 238
                     6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.10.104.8E-42178IPR011989Armadillo-like helical
SuperFamilySSF902297.38E-6214238IPR000571Zinc finger, CCCH-type
SMARTSM003560.0092214240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23214241IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5219238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MPHDDQSPPP GEVSDSADIE EEEEEEEEEE DPEIEEEEDD DDEEEDPEIV EEEEEEEEEE  60
EEEEEEEEEE EVEGEQEEIM EEERIEVDMD ISDSPVQARD HHNDVRQDYK PEGLHGLHSN  120
ESHDDGKAYL RHSEVMDAKA SNSSGVAGEE MANAILMRDH LGKEVKSVMN PEDEMKQGDI  180
HPRNDRKQMD SRSAASEKVT RIMSPVAETS DRNKRPAIIC DFFAKGWCIR GTSCKFVHIK  240
DSPNSTHPQG DVAAANCTRE VQPDEGLRDV TERSRSPGFP DPLASSHLPS EKIRFSEHKG  300
IQRRHQSLEN HKFPAVPGGE SNMGESTDAQ KLHSSKDDQV FLSLFKDAGR DGHARNWPID  360
VYNNSPIHKD NSRFMSGLHP EPGFFSNGST ASSGKYSRGN PTSQSSCMEE PAGIWSQRMH  420
SDHNSPLVSL SLNSNSSNLL TNGSFPASRV SSWTGFSLPS SYSCLDASPH GTQKLLDRNR  480
DYRYSTRSSP LLKSSSPFSS SELKKLPSTS VSLRSDKLQT KISSNDWEPS VPFQPSFILP  540
PAFLSSSGSQ YDPLRDSIEL PKLANISFEA SFYSEEAAIG NKLHHQIHGE SVSGTMRPVC  600
DGDTNSMSSH NTCHEKVLDN SCYTREHNSP VTEAETVGAS VVCQNGTMTI EENLSRPSHP  660
KGSTKPHKTS SYGDSRPQSD SSRHKKDITV DRFRENNEVD GEHVTDGDVQ QESKALRHFR  720
AALVELVKEL LKPKWREGCL SKDAHNKIVK KAVEKVLSAF QPQQIPPTVE TVVQYLSSCR  780
PKISKLVEGY VEKYGKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016648794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016648794.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A251PFZ00.0A0A251PFZ0_PRUPE; Uncharacterized protein
STRINGXP_008225128.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-36C3H family protein