PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647790.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 942aa    MW: 111210 Da    PI: 7.25
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647790.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-06234253625
                     -SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                     C+f+++tG C++G rC++ H
  XP_016647790.1 234 CPFHLKTGACRFGQRCSRVH 253
                     ******************99 PP
2zf-CCCH22.71.7e-07363390126
                     --S---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                     +k ++C  ++++    C++G  C+F+H+
  XP_016647790.1 363 WKVAICGEYMKSRykNCSHGTACNFIHC 390
                     899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.23228256IPR000571Zinc finger, CCCH-type
SMARTSM003563.4229255IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4233253IPR000571Zinc finger, CCCH-type
PRINTSPR018488.9E-38234253IPR009145U2 auxiliary factor small subunit
PRINTSPR018488.9E-38253273IPR009145U2 auxiliary factor small subunit
PROSITE profilePS501029.9260360IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3301.0E-25260358IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd125402.83E-46261359No hitNo description
SMARTSM003614.7E-6280356IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018488.9E-38289304IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549283.7E-16292361IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018488.9E-38317339IPR009145U2 auxiliary factor small subunit
PRINTSPR018488.9E-38344368IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.54362392IPR000571Zinc finger, CCCH-type
SMARTSM003560.093362391IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-5363390IPR000571Zinc finger, CCCH-type
PRINTSPR018488.9E-38382394IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
MMDLADPVAK EGGEADVEPK MERLAEEKGT NRKEKRKAMK KMKRKQTRKE MALKEREEEE  60
AILNDPQELM KIKLMEQEEA ERSERERKLF EERERAWIEA MEIKRKKQIE EEEEEEERRM  120
KALEEEELSR KQQVENENDG NEVDDWDYIE EGPAEIIWQG NEIIVKKKRI KVPKRNTEQQ  180
SRKEDCDRPT SNPLPPQSEA FSDYKNSSMS AQQLIENVAQ QVPHFGTEQD KAHCPFHLKT  240
GACRFGQRCS RVHFYPDKSS TLLIKNMYNG PGLAWEQDEV LEHTDEEVER CYEEFYEDVH  300
TEFLKFGEII NFKVCRNGAF HLRGNVYIHY KSLDSAVLAH QSINGRYFAG KQISCEFINV  360
TRWKVAICGE YMKSRYKNCS HGTACNFIHC FRNPGGDYEW ADSDRPAPKY WVRKMVALFG  420
YSDADEKQMV EENFGQLRNS SKMTIADSER YGLRRSRSRG RDYSSFIGSG RRYDSEDYVL  480
KDAERQRHTG DDRHRGKTLD EDRCEENKNL KDYHCRKSRR SDTEFDRQLL DREEDRDRHH  540
GHTRKSSRQR NRDHKNKIYE TESDGDLSDR ARNRVAQHGY TRESSSQQRK GEFLDEYGDW  600
QNKNHEVDRY WSDRDKDRDA YHDKRKSSGH KRKVGSPDNH NDIENRAHDM DEEWSDSNSK  660
GGKHHSRRKR FGHISKASEF LNHRGRTTRS CSYELSDDLL ENDAERNLSH ARKRSKRLDE  720
VSDISDEDRF RTQNLEHRHD RLSLEMREAG ALVEKLKSDG THESSNLGQD GERYRSHDFD  780
IRYISDVHMD KQDRWEPEDG SVEIFHNSKT KAGSSESYDS GRPGPYNVRG ESSDFDSEDK  840
VGQEDQYESD KVARSKHRKS RRKSTHDDRK RDSENRSLCS SQSSHRNHSN RLEATDSSED  900
NNKSGRKHNQ KHHADHRSRD HKRDHKGRRN KERTLSKKGI QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A1e-292253899167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647790.10.0PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1
SwissprotQ9SY740.0C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A251RK360.0A0A251RK36_PRUPE; Uncharacterized protein
STRINGXP_008218649.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-147C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]