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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016647633.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 235aa MW: 27426.4 Da PI: 9.5312 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 22.2 | 2.5e-07 | 82 | 128 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h +Er RR++ ++++ L ++lP+ a K +K i++++ I++Lq
XP_016647633.1 82 SHMLNERMRREKQKQGYMALHSMLPTgA------KSDKNWIVQMTAMNIQQLQ 128
58889*********************66......899999*****99999998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.79E-10 | 77 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 10.544 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 7.8E-5 | 82 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 5.8E-7 | 82 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 235 aa Download sequence Send to blast |
MNMDQYILEA LEGEFLLYES LPVLNQRAFV PYTSRPITEK GLDKPPNSMN MNKRMVQFLR 60 KIWAPATARI VTGEDCRERG FSHMLNERMR REKQKQGYMA LHSMLPTGAK SDKNWIVQMT 120 AMNIQQLQRY KEELRKRNME VEAILVANEK ERVNWSKIRL RVANPTSGVD SMLEVLRCLQ 180 YLGLKARNVQ SNFSAQEFSA ELEIETKVSX AEIEEALQET LYEAERKLRF SIPGR |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_016647633.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016647633.1 | 1e-174 | PREDICTED: transcription factor bHLH92 isoform X2 | ||||
| TrEMBL | M5XRD4 | 1e-165 | M5XRD4_PRUPE; Uncharacterized protein | ||||
| STRING | EMJ28464 | 1e-166 | (Prunus persica) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G43650.1 | 2e-42 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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