PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016647392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 29987.9 Da PI: 5.2036 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.4 | 7.1e-33 | 71 | 201 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevl 93 +G+rF+P+++++vv+yL +k+ g++l+++++ike+ +y+++P +Lp+ k+ + +e ++F+ +++ y++ gk ++r+tksgyW g+++ev+ XP_016647392.1 71 VGYRFDPSEDQIVVFYLFNKILGRELPINDIIKEISVYDHDPDELPNgdfKHGLDCNEAFYFAYTEQVYSSrGKITRRTTKSGYWDLDGEEEEVK 165 7*********************************************5444444467799********99963777888****************9 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +vg k++vf+kg+ap+g +td +mheyr+ XP_016647392.1 166 YRnGDITVGFEKVMVFHKGTAPNGIETDFIMHEYRV 201 9856677***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-33 | 69 | 230 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.332 | 69 | 230 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-16 | 71 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MPYSSSFIEQ SFSHNSPTQT QTKAQVIIVL LFMALPSPQS TSQVPETEKD FDLLKCSKIE 60 NGKKEAEIHL VGYRFDPSED QIVVFYLFNK ILGRELPIND IIKEISVYDH DPDELPNGDF 120 KHGLDCNEAF YFAYTEQVYS SRGKITRRTT KSGYWDLDGE EEEVKYRNGD ITVGFEKVMV 180 FHKGTAPNGI ETDFIMHEYR VNPLIVPTHV LNDSIRAKIE RYVVCRIIHE GVSNFPRTNF 240 HQDGLLGLLK KQNQIDMTEI A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-23 | 65 | 230 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_016647392.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008221511.1 | 0.0 | PREDICTED: NAC transcription factor 29-like isoform X1 | ||||
Refseq | XP_008221512.1 | 0.0 | PREDICTED: NAC transcription factor 29-like isoform X1 | ||||
Refseq | XP_008221513.1 | 0.0 | PREDICTED: NAC transcription factor 29-like isoform X1 | ||||
Refseq | XP_016647392.1 | 0.0 | PREDICTED: NAC transcription factor 29-like isoform X1 | ||||
TrEMBL | A0A251R4K3 | 0.0 | A0A251R4K3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008221511.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 4e-28 | NAC-like, activated by AP3/PI |