PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016647371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GATA | ||||||||
Protein Properties | Length: 385aa MW: 42190.5 Da PI: 6.8629 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55 | 1.1e-17 | 267 | 301 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l XP_016647371.1 267 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 301 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-17 | 261 | 311 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.532 | 261 | 297 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 262 | 299 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.14E-15 | 263 | 325 | No hit | No description |
CDD | cd00202 | 1.39E-14 | 266 | 313 | No hit | No description |
Pfam | PF00320 | 1.5E-15 | 267 | 301 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 267 | 292 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEAPEYFQNS FCPQFTPEKR HSFDNNNNKA TNGGGGGGDH FMVEDLLDFS NDDAVITDGG 60 ATFDNVTGNS TDSSTLTVVD SCNSSSLSGS EPNVIPDIGS RNIAEGPFSS DLCVPYDDLA 120 ELEWLSNFVE ESFSSEDLQK LQLISGMKAR PDEAASETRQ FQPERNRNDN AQNTTTTNNN 180 PIFNPDVSVP AKARSKRSRA APCNWTSRLL LLSQPTSSSE QSDVVSSGPG SPLPPPSTTG 240 KKTVKSAPKK KESPEGPGGG PGEGRKCLHC ATDKTPQWRT GPMGPKTLCN ACGVRYKSGR 300 LVPEYRPASS PTFVLTKHSN SHRKVLELRR QKEMVRAQPQ FIHQVPPQQH HHHHHHHHQN 360 MVFDVSNGGD YLIHQHAGPD FRQLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016647371.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220089.1 | 0.0 | PREDICTED: GATA transcription factor 12 isoform X1 | ||||
Refseq | XP_016647371.1 | 0.0 | PREDICTED: GATA transcription factor 12 isoform X2 | ||||
Swissprot | P69781 | 2e-93 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | M5Y804 | 0.0 | M5Y804_PRUPE; GATA transcription factor | ||||
STRING | XP_008220089.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 6e-74 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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