PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016647267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 330aa MW: 36022.5 Da PI: 6.4363 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.2 | 6.8e-33 | 169 | 226 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ XP_016647267.1 169 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 226 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-34 | 153 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-28 | 160 | 226 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.712 | 163 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-38 | 168 | 227 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 169 | 226 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MDDDKYNRDP ASTTEFTTQS TWPLDPDSAY FFASHDVRDN TLLTEFGWNF HPDGSRPDGF 60 SELDPIGTRD MSDLAATSSQ LVADCLRPAD SSSSSTAAFR SSDPAPAVGS ASTNPSGSST 120 SSEDPPEKST GSGGKPPPEI PSKVKKKGQK RIRQPRFAFM TKSEVDHLED GYRWRKYGQK 180 AVKNSPFPRS YYRCTNSKCT VKKRVERSSE DPTIVITTYE GQHCHHTVAF PRGGVIAQES 240 GFAGHHLAQL PPVSSHFMYY PAIQPRERVS PVNLTRTTSH QLASPRGDDD DDDDQAAGAG 300 SSHCLNPQTT SVPADEGLLG DIVPPGMRNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 158 | 225 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 158 | 225 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016647267.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008221525.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Refseq | XP_016647267.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
TrEMBL | M5XCG6 | 0.0 | M5XCG6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008221525.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 4e-68 | WRKY DNA-binding protein 57 |