PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016646851.1 | ||||||||
Common Name | PmDAM2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25151.7 Da PI: 5.274 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.1 | 1.3e-24 | 19 | 62 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss XP_016646851.1 19 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 62 69****************************************96 PP | |||||||
2 | K-box | 36.4 | 2.2e-13 | 79 | 164 | 7 | 89 |
K-box 7 ksleeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 ++++++ + +lq e+++ + +++L r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K l+e ++l++++ +l++ XP_016646851.1 79 VEKSDEPSVELQLEIENQIRLNKELAeksRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKGAELVEANNQLRQRMVMLSR 164 44666667778888887777777776666999************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-31 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.296 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-23 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-27 | 6 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-21 | 19 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-23 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.9E-23 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.772 | 89 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.2E-8 | 95 | 164 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVKTMRKKIK IKKIDYLPAR QVTFSKRRRG IFKKAEELSV LCESEVAVVI FSATGKLFDY 60 SSSSTKNVVE RYKAHTNGVE KSDEPSVELQ LEIENQIRLN KELAEKSRQL RQMRGEDLEE 120 LNIDELQKLE QLVDASLGRV IETKGAELVE ANNQLRQRMV MLSRGNIGPG LTEPERFINN 180 IGDGGEEGMS SESATNATIS SCSSGLSLSL EDDCSDVTLA LKLGLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 3e-16 | 6 | 75 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 3e-16 | 6 | 75 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 3e-16 | 6 | 75 | 2 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 3e-16 | 6 | 75 | 2 | 71 | Myocyte-specific enhancer factor 2A |
5f28_A | 5e-16 | 6 | 75 | 3 | 72 | MEF2C |
5f28_B | 5e-16 | 6 | 75 | 3 | 72 | MEF2C |
5f28_C | 5e-16 | 6 | 75 | 3 | 72 | MEF2C |
5f28_D | 5e-16 | 6 | 75 | 3 | 72 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016646851.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ863254 | 0.0 | DQ863254.1 Prunus persica dam2 alpha mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016646851.1 | 1e-163 | PREDICTED: MADS-box protein JOINTLESS-like isoform X4 | ||||
Swissprot | Q9FUY6 | 8e-61 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | G1UE20 | 1e-140 | G1UE20_PRUMU; Dormancy associated MADS-box 2 | ||||
STRING | XP_008219270.1 | 1e-142 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 7e-52 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 103319500 |
Publications ? help Back to Top | |||
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