PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016646754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 663aa MW: 74091.9 Da PI: 9.7326 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.6e-07 | 570 | 619 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_016646754.1 570 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFdgaKHRTYVDLKDKWKTL 619 567888899*****************99888889*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.0E-5 | 377 | 449 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 13.67 | 565 | 624 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-7 | 569 | 622 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 570 | 620 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.46E-15 | 571 | 652 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.88E-16 | 571 | 621 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MVLQRRLDYG FNGYQVPEVP RASRSARGRG PIKKKLEANQ IRAFEILASV AGKLLQESEH 60 PLPTNDSCGK DAHFIFDDTT KSKQEKGNLS KEDPCERGSC DEQTLLCVGR MQECQQSYTL 120 NGVSHSQENF SYEINRASKS FDHSESIYSN KVFSDSPLSG DSVEEKPRGV LKRKLETGPS 180 KDTSIKDERT QILGSSEDVM KVEGMPPELV SCGHDVKTSF SRDCKNHDPL LCDCANIKVD 240 SRDDDENCVR YAQPLSVVKE FEHPPDASDE KINNLAASRH WRVAPERRIG GYSRNDEKIR 300 QVYRHGRTCY THQRSQKIFP FKKRKFFNQM PLTTTPDRGF NCESIFNSPD KRVNSDNYCA 360 EIGPSSSTTG GRVPLKSSDC NVKLSIKSFK VPDLFIEIPA TATVGSLKRT VMEAVTSILG 420 DGLHVGILVR GKKVRDDNKT LLQTGISQDE KSRNLGFMLE PKRAKLTYSP RSKDPSLPSG 480 RSRELTRHSA SLVSQPGTSN VSPNPPVINF GGCVKRDLNA APSLPCTSTE KTPQASQALV 540 AVPPISMNAL AVVPFHRKSG HPEYVQRRIR RPFSVPEVEA LVQAVEKLGT GRWRDVKLRA 600 FDGAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLAAHACW SQRRAKQQVK 660 AAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-51 | 554 | 660 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 315 | 324 | QKIFPFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016646754.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240801.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Refseq | XP_008240809.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
Refseq | XP_016646754.1 | 0.0 | PREDICTED: telomere repeat-binding protein 5-like | ||||
TrEMBL | M5WL30 | 0.0 | M5WL30_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240801.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-109 | TRF-like 2 |