PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008246423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 740aa MW: 79958.7 Da PI: 5.8895 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.8 | 1.7e-31 | 313 | 370 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +D ynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k XP_008246423.1 313 EDVYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 370 7****************************************.***************85 PP | |||||||
2 | WRKY | 102.8 | 2e-32 | 529 | 587 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ XP_008246423.1 529 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 587 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.848 | 307 | 371 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-28 | 310 | 371 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-25 | 310 | 371 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-34 | 312 | 370 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-23 | 313 | 369 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.5E-37 | 514 | 589 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 521 | 589 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.32 | 524 | 589 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 529 | 588 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-25 | 530 | 587 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MAGIDDNVAI IGDWVPPSTS PRAFFSSMLV DDIGSRSMLE PPSSNKTAEF FLGSQEEDNN 60 GKNLSQGNAS GEELNEVGSF SEYKSNSRGG LVERIAARAG FNAPRLNTES IRSSDLSLNS 120 DIRSPYLTIP PGLSPTILLD SPVFLSSSLA QPSPTTGKFP FVSNGHSRSS TLMTEGPDKT 180 NFFEDINTSF AFKPIAESGS FFLGPTSKMG STSFPQQSFA SIEVSVQSEN SSQSIEPTKV 240 QNQNTNNLQL QADFSRTSTE KDNGANSADP RAFDTVGGST EHSPPLDEQP DEEGDQRGSG 300 DSMAAAAGGT PSEDVYNWRK YGQKQVKGSE YPRSYYKCTH PNCQVKKKVE RSHEGHITEI 360 IYKGAHNHPK PPPNRRSAAI GSSNPLNDMR PDIPEQGGPQ SGADGDLVWA STQKANVGAP 420 DWKHENLEVT SSASVGPDYC NQSSSMQAQN GTHLESGDVV DASSTFSNDE DEDDRGTHGS 480 VSLAYDGEGD ESESKRRKIE AYATEMSGAT RAIREPRVVV QTTSEVDILD DGYRWRKYGQ 540 KVVKGNPNPR SYYKCTNAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARNSSHVNSG 600 PSNTMSGQAS SAGIQTHPHR PEPSQVHNSM ARFERPSSLG SFSLPGRQQL GPSHGFSFGM 660 NQPGLANLAM AGLGPGQPKL PVMPVHHPYF AQQRQVNEMG FMLPKGEPKV EPMSESGLNM 720 SNGSSVYQQL MSRLPLGPQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 313 | 590 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 313 | 590 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008246423.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ950367 | 0.0 | KJ950367.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008246415.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Refseq | XP_008246423.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Refseq | XP_008246431.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | M5W2N0 | 0.0 | M5W2N0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008246415.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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