PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008246415.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 740aa    MW: 79958.7 Da    PI: 5.8895
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008246415.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31313370260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +D ynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  XP_008246415.1 313 EDVYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 370
                     7****************************************.***************85 PP
2WRKY102.82e-32529587159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  XP_008246415.1 529 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 587
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.848307371IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-28310371IPR003657WRKY domain
SuperFamilySSF1182906.67E-25310371IPR003657WRKY domain
SMARTSM007742.1E-34312370IPR003657WRKY domain
PfamPF031061.5E-23313369IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-37514589IPR003657WRKY domain
SuperFamilySSF1182901.96E-28521589IPR003657WRKY domain
PROSITE profilePS5081138.32524589IPR003657WRKY domain
SMARTSM007741.9E-37529588IPR003657WRKY domain
PfamPF031067.6E-25530587IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWVPPSTS PRAFFSSMLV DDIGSRSMLE PPSSNKTAEF FLGSQEEDNN  60
GKNLSQGNAS GEELNEVGSF SEYKSNSRGG LVERIAARAG FNAPRLNTES IRSSDLSLNS  120
DIRSPYLTIP PGLSPTILLD SPVFLSSSLA QPSPTTGKFP FVSNGHSRSS TLMTEGPDKT  180
NFFEDINTSF AFKPIAESGS FFLGPTSKMG STSFPQQSFA SIEVSVQSEN SSQSIEPTKV  240
QNQNTNNLQL QADFSRTSTE KDNGANSADP RAFDTVGGST EHSPPLDEQP DEEGDQRGSG  300
DSMAAAAGGT PSEDVYNWRK YGQKQVKGSE YPRSYYKCTH PNCQVKKKVE RSHEGHITEI  360
IYKGAHNHPK PPPNRRSAAI GSSNPLNDMR PDIPEQGGPQ SGADGDLVWA STQKANVGAP  420
DWKHENLEVT SSASVGPDYC NQSSSMQAQN GTHLESGDVV DASSTFSNDE DEDDRGTHGS  480
VSLAYDGEGD ESESKRRKIE AYATEMSGAT RAIREPRVVV QTTSEVDILD DGYRWRKYGQ  540
KVVKGNPNPR SYYKCTNAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARNSSHVNSG  600
PSNTMSGQAS SAGIQTHPHR PEPSQVHNSM ARFERPSSLG SFSLPGRQQL GPSHGFSFGM  660
NQPGLANLAM AGLGPGQPKL PVMPVHHPYF AQQRQVNEMG FMLPKGEPKV EPMSESGLNM  720
SNGSSVYQQL MSRLPLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36313590878Probable WRKY transcription factor 4
2lex_A1e-36313590878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008246415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9503670.0KJ950367.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246415.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_008246423.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_008246431.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLM5W2N00.0M5W2N0_PRUPE; Uncharacterized protein
STRINGXP_008246415.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]