PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245834.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 493aa    MW: 55405.1 Da    PI: 7.5316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245834.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12303348454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  XP_008245834.1 303 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINKL 348
                     799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-4220208IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.14E-18296365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-14297353No hitNo description
PROSITE profilePS5088817.003299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17303362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEEIMSSCSP NFGQENSATL QQRLQFIVQN RPEWWVYSIF WQASKDSNGQ VALSWAGGHF  60
RSSRDLASKR SNKLVHNYQP KSGFISTERK KVVNREVEAL FHEDMDLDGG DVTDSEWFYF  120
YTVSLTQSFA ACHGTGNILG RAFCSGGFVW LAGDHELQFY ECERVKEARM HGIQTLVCIQ  180
TSCGVLELAS LDVIKEDWGL VEVSKSLFGS ENSRVSKPQS SREGHVLVPL LESGMFSAGP  240
QKEWTAQGGT KERFALNIGG SSSDSGPSDS VGNFTTENAE NNGRLKKRGR SSNHGTDRES  300
PINHVEAERQ RREKLNHRFY ALRSVVPNVS KMDKASLLSD AVVYINKLKA RVEELEAKIQ  360
QQPQKPKLGI LSNLEHHQSN QSASSIVDHH RHHHHHQARP RPASSYTNCE VAGAIEVDVK  420
IVGSEAMIRV QSPDQNYPYA RLMNALKDLE LQVYHASISS VKEMMLQDVV ARVPHGFTSE  480
EAMRTAIIKR WYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-24142083192Transcription factor MYC3
4rqw_B2e-24142083192Transcription factor MYC3
4rs9_A2e-24142083192Transcription factor MYC3
4yz6_A2e-24142083192Transcription factor MYC3
5gnj_A1e-25298375383Transcription factor MYC2
5gnj_B1e-25298375383Transcription factor MYC2
5gnj_E1e-25298375383Transcription factor MYC2
5gnj_F1e-25298375383Transcription factor MYC2
5gnj_G1e-25298375383Transcription factor MYC2
5gnj_I1e-25298375383Transcription factor MYC2
5gnj_M1e-25298375383Transcription factor MYC2
5gnj_N1e-25298375383Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245834.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_016652703.10.0PREDICTED: transcription factor MYC2-like isoform X2
TrEMBLA0A251P7Q60.0A0A251P7Q6_PRUPE; Uncharacterized protein
STRINGXP_008245834.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-63bHLH family protein