PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245386.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 495aa    MW: 55533.1 Da    PI: 7.4036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245386.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11311357455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  XP_008245386.1 311 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 357
                     799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-4122218IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.45E-17304370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-13305361No hitNo description
PROSITE profilePS5088816.037307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16311370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9311356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-15313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEEIISSSSS PQFCQETAAT CQQRLQFIVQ NRPEWWVYAI FWQASKDSND QISLSWAGGH  60
FKSSKDLASK RSNKVMNNYQ PKFGFNNVQR KKVINRGCAE SLFHEDLEDL DMRLVDHGVG  120
DVTDSEWFYF YSVSLTQSFA AGHATNNILG RAFCSGGFVW LAGAHELQFY ECERVKEARM  180
HGIQTLVCIA TPCGVLELAS LDVIKEDWGL VHLSKSLFGS DNNRISKQGS RDGNAPVPFP  240
ESGMFSGPQK DFPRQEGDTK EAAPINIGGS SSDSPSDSVG NFTSENTERT RLKKRGRSTN  300
HGPGRESQLL NHVEAERQRR EKLNHRFYVL RSVVPNVSKM DRSSLLADAV AYINQLKSKV  360
EELEAKIQSQ TQNPKMGNVS NLDHHSSQST SSIVDFHHSS NNNNNNNNNN NNRAGVVEVD  420
VKILGSEAMI RVQCPDQDYP YAKLMNALKS LGLQIYHASI SSVKEMMIQD IVARVPYGFS  480
SEEAMRMGII KRWYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-25112182192Transcription factor MYC3
4rqw_B2e-25112182192Transcription factor MYC3
4rs9_A2e-25112182192Transcription factor MYC3
4yz6_A2e-25112182192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245386.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A251P9710.0A0A251P971_PRUPE; Uncharacterized protein
STRINGXP_008245386.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-64bHLH family protein