PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008245385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 475aa MW: 53597.4 Da PI: 7.4409 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.7e-11 | 296 | 342 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++ ++ L Av YI++L+ XP_008245385.1 296 KHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 342 699***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.0E-37 | 22 | 211 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.993 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-12 | 295 | 346 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-16 | 295 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-15 | 296 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-9 | 296 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-14 | 298 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 475 aa Download sequence Send to blast |
MEEIIPSSSP PQLCQENSVS FQQRLQFIVQ NRPEWWVYSI FWQASKDSND QVALSWAGGH 60 FESPRDLASK RSNKMVNNKH FVERKKVINN REAESLFHEE MDLDMRLVDH GVGDVTDCEW 120 LYFYSISLTQ SFVAGHATNN ILGRSFCSGG FVWLAGDHEL QFYECERVKK ARMHGIKSLV 180 CIATPCGVLE LASLDVIKED LGLVLLSKSL FLSDNNRVSK QDSRDGNALV PPLESGMFSG 240 GQKDLTKQGD TKEAAPINIG GSSSDSADNF TSDNTESTRL KKRGRSSSNH APQLLKHVEA 300 ERQRREKLNH RFYVLRSVVP NVSKMDRSSL LADAVAYINQ LKAKIEELED KIQSQPQNPK 360 RGNVSNADHH HYSQSTSPIV DFHHSNNNNT NRAADALEVD VKILGSEAVI RVQCPDQEYP 420 YAKLMNALKS LRLQVYHASI SNVKELMIQN VVVRVPYGFT SDEAMRVGII KKWYN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-26 | 15 | 211 | 3 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-26 | 15 | 211 | 3 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-26 | 15 | 211 | 3 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-26 | 15 | 211 | 3 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 279 | 285 | LKKRGRS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008245385.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008245385.1 | 0.0 | PREDICTED: transcription factor bHLH14-like isoform X2 | ||||
TrEMBL | A0A251P7U7 | 0.0 | A0A251P7U7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008245384.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00870.1 | 4e-57 | bHLH family protein |