PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245308.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 340aa    MW: 37863.7 Da    PI: 6.0151
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245308.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.31.7e-24169229259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK + ++++pr+Y+rCt++    C+++k+v++ ++dp ++ +tY g+H+++
  XP_008245308.2 169 EDGHAWRKYGQKLILNAKHPRNYFRCTHKfdqACQATKHVQQVEDDPPLFRTTYYGNHTCR 229
                     7***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-24160229IPR003657WRKY domain
PROSITE profilePS5081120.162163231IPR003657WRKY domain
SuperFamilySSF1182901.44E-23166229IPR003657WRKY domain
SMARTSM007742.4E-36168230IPR003657WRKY domain
PfamPF031062.7E-24169229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEGVSSNRQS EMEELIQGGE VASGQLSRVI NLHNNRSLTV NGDHNHDLGS GDDEGFVNKM  60
LGSFSNTLFI ANGKEMKEFH HHDDQELISD QIIQVNTGGG GGGGGGGGGG GAGASSWDVD  120
HLLDHAIKCE ASHEESCKSA STFSTDRRGS YKKRKTCHSW IKDSPALTED GHAWRKYGQK  180
LILNAKHPRN YFRCTHKFDQ ACQATKHVQQ VEDDPPLFRT TYYGNHTCRV YLKASELILD  240
CTSPRESSKF IRFDDTNPSS KQEHPFFSSF KSLKGEECFK EETMPSDYMT TQHHNQLALS  300
DYLVSPPDLP AFTSPGLMSG FASANYDDFA FDEFLQYELR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-23169229969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245308.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245308.20.0PREDICTED: probable WRKY transcription factor 38
TrEMBLM5W3W00.0M5W3W0_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008245308.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-28WRKY DNA-binding protein 70