PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244800.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 536aa    MW: 59645.6 Da    PI: 7.3051
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244800.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32235292260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d+++++i+Y+g+Hnh+k
  XP_008244800.1 235 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGHITQIVYKGSHNHPK 292
                     8****************************************.***************85 PP
2WRKY105.92.1e-33399457159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+++d+++v++tYeg+Hnh+
  XP_008244800.1 399 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERASHDTRAVITTYEGKHNHD 457
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-28227293IPR003657WRKY domain
PROSITE profilePS5081123.284229293IPR003657WRKY domain
SuperFamilySSF1182903.79E-25231293IPR003657WRKY domain
SMARTSM007741.3E-35234292IPR003657WRKY domain
PfamPF031065.6E-25235291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37384459IPR003657WRKY domain
SuperFamilySSF1182901.96E-29391459IPR003657WRKY domain
PROSITE profilePS5081138.779394459IPR003657WRKY domain
SMARTSM007743.1E-39399458IPR003657WRKY domain
PfamPF031061.3E-25400457IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MTSSFTHLLT SNMNNMDTNI DQERTNWGLS DYSSDRLMDR NGIEIPKFKS LQPPSLPMSP  60
PPVSPSSYLA STPAFSPTDF FSSPMFLSSS NTLQSPTSGA FSSQIFDWMS NSKETQQGME  120
REQKMFSEFS FQPETRPAAT SSSSFNIQAS SIMASVEESL KMEQKPWDFN RISRQADSST  180
EKTGVKSEFE PLQIILPEIG TNQTNMQTNG PSGAPRPDSI HCTQSSQFVR EQKSDDGFNW  240
RKYGQKQVKG SENPRSYYKC TYPNCPTKKK VERSLDGHIT QIVYKGSHNH PKPQSTRRST  300
SQSIQGSSYG ISDQSVPTIS NPKMESVTMQ EDSSASIGED EFEQNSPLSN SGGAEDENEP  360
EAKRWKGENA NDQPFSAAGS RIVKEPRIVV QTTSEIDILD DGYRWRKYGQ KVVKGNPNPR  420
SYYKCTSVGC PVRKHVERAS HDTRAVITTY EGKHNHDVPA ARGSGSYSNG NRPASDNGSN  480
NNSNVSMAVR PLALPNHSNL SYLSSLQNTR QPTTERQSPY TLKMLQSEGS YGFPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34235460878Probable WRKY transcription factor 4
2lex_A5e-34235460878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244800.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ6B6R41e-119WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLM5VYP10.0M5VYP1_PRUPE; Uncharacterized protein
STRINGXP_008244800.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-110WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]