PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244778.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 335aa    MW: 37349.3 Da    PI: 6.1553
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244778.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.81.3e-24153213259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqK+++++++pr+Y+rCt++   +C+++k+v++  +dp v+ +tY g+H+++
  XP_008244778.1 153 DDGHAWRKYGQKVIHNAKHPRNYFRCTHKfdqSCQATKHVQQILDDPPVFRTTYYGNHTCR 213
                     8***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-25138213IPR003657WRKY domain
SuperFamilySSF1182907.45E-24145213IPR003657WRKY domain
PROSITE profilePS5081120.449147210IPR003657WRKY domain
SMARTSM007743.8E-36152214IPR003657WRKY domain
PfamPF031065.8E-24153213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MELSWPESVL SNRERVMEEL IQGRELASQL CKVLDDHKST LVSGCGGGGG GDVGSAEGLV  60
NKILGSFTNT LLILNGKEAD GEIVSGDQIQ GNSSGIGSAD SSSWDANHAI IKSEDFHEEI  120
SCKSASTFKD RRGSYKRRKT SHSWTRDTPA LTDDGHAWRK YGQKVIHNAK HPRNYFRCTH  180
KFDQSCQATK HVQQILDDPP VFRTTYYGNH TCRDYLKASE LILDCTSPRE SSSFIRFGDI  240
KQDHPFFSSF TSVKKEVVIK EEKPQPSDDM MASHHHNHSS SGDYNVSPHP TEFKSSCPLS  300
GLSSTIDPYD HEGDVMSGLI VGPYYFDDEV LQYEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-23153213969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244778.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A251NXF10.0A0A251NXF1_PRUPE; Uncharacterized protein
STRINGXP_008244778.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-30WRKY DNA-binding protein 70