PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244505.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 466aa    MW: 52348.7 Da    PI: 6.1923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244505.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19224274256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  XP_008244505.1 224 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 274
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-33223283No hitNo description
PROSITE profilePS5103222.998224281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-32224282IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23224282IPR016177DNA-binding domain
SMARTSM003801.5E-40224287IPR001471AP2/ERF domain
PfamPF008472.8E-12225274IPR001471AP2/ERF domain
PRINTSPR003678.5E-11225236IPR001471AP2/ERF domain
PRINTSPR003678.5E-11247263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAAAKKSGKS KKGVEESEME TSLDWEINED KDLGFSFESQ PWKLGFNEAS MISKRPLKKI  60
KSPERQDPIQ SSASSAHQAT SSTTPCPSSS SSRIVFPFAF DGSQQPVQFP NQFNTTTAPI  120
YPSPFSQQQQ QQNQQQMISF ASQQQQQQQQ QQQQQQQQHG MTYPPPFLGD STTWQQQQQH  180
QILQYWSDAL NLSPRGRVMM MNRLGPDGRP LFRPPAMPYN TTKLYRGVRQ RHWGKWVAEI  240
RLPRNRTRLW LGTFDTAEDA AMAYDREAFK LRGENARLNF PELFLNKDNT SVSTAPSSTA  300
TSPTAQESSM PTTTRNRKQS RKVQKKASNT EAMPPPPPPP PHTEEDNTDD DSGLGSSEAK  360
TSDEFQANMN AAGGGNSQPE ELVWGDMAEA WLNAIPAGWG PGSPVWDDLD TNNNLLLQSH  420
LPFTNPNQQN FNNICPELER QQDHSGSASS SSSSYPMKNF LWKDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20223281160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244505.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244505.10.0PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLM5WW710.0M5WW71_PRUPE; Uncharacterized protein
STRINGXP_008244505.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-55ERF family protein