PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244251.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 30157.3 Da    PI: 9.8669
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244251.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-282171151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtf+kRrng+lKKA+ELSvLCdaevavi+f+stg+lye+ss
  XP_008244251.1 21 KKIENVNSRQVTFTKRRNGLLKKAKELSVLCDAEVAVIVFASTGRLYEFSS 71
                    68***********************************************96 PP
2K-box54.93.9e-1911219517100
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +++++ L++ei +L+    +++G++L+ Ls+keLqqLe+qL +++  +++kK+e+lle ++ ++  e+++ een++Lrk+lee
  XP_008244251.1 112 PNRDVNGLQNEIATLRLACMRMMGKELHGLSYKELQQLEEQLREGVLFVKQKKEEILLETLKSSRLLEQRAMEENENLRKQLEE 195
                     5678999*********999**************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-391372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.6181373IPR002100Transcription factor, MADS-box
CDDcd002654.35E-401484No hitNo description
SuperFamilySSF554553.53E-301486IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001569IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-291535IPR002100Transcription factor, MADS-box
PfamPF003194.5E-252269IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-293550IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-295071IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.89109199IPR002487Transcription factor, K-box
PfamPF014862.5E-12112193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNTENNADTR KTMGRGRIEI KKIENVNSRQ VTFTKRRNGL LKKAKELSVL CDAEVAVIVF  60
ASTGRLYEFS STSMPHTLLR YKKGGVIDYP QERSSEPATK EPNFVQKRKV EPNRDVNGLQ  120
NEIATLRLAC MRMMGKELHG LSYKELQQLE EQLREGVLFV KQKKEEILLE TLKSSRLLEQ  180
RAMEENENLR KQLEEMRQTH KPNWQIVPAS DHPLESSKAV SSYEPDTYLH LGLSSSSDAH  240
YQKRKAAKIE RNSNDSGSQV VSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-211381169MEF2C
5f28_B1e-211381169MEF2C
5f28_C1e-211381169MEF2C
5f28_D1e-211381169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244251.10.0PREDICTED: agamous-like MADS-box protein AGL18
TrEMBLA0A314Y6F20.0A0A314Y6F2_PRUYE; Agamous-like MADS-box protein AGL18
STRINGXP_008244251.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-55AGAMOUS-like 18