PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244210.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 431aa    MW: 48369.4 Da    PI: 5.7502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244210.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.7e-14218269155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  XP_008244210.1 218 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIVGGAIDFVKELE 269
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.11E-13216273No hitNo description
SuperFamilySSF474597.07E-17217286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.777217268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14218282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-11218269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-11223274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MERLQGPIDP CFFGEHLDFQ CLEQGLSTTE SLRFEEEEEA AHLSIPSLED KMPFLQMLQT  60
VNSPPPYFPL KEPSFQALLR LQHLKNPWEL GKAYMPEMET QLQTALEIES CVTHDMVELH  120
SPVKSEAKDL HNHPHSVSAG NLEAVSSDCI QDQEQPNSAE INCRRKGNNS SGSPPPTWAQ  180
AQNEPEQTQY PKSPPVTRER RKRKRTRPTK NKEEVESQRM THIAVERNRR RQMNDHLNVL  240
RSLMPTSYIQ RGDQASIVGG AIDFVKELEQ LLQSLEAQKR MRRADQGSNG DNSFSSSSSS  300
SSASMAMPSN GMFMSLSQCR IGSHEEGTTT TPLEDEVTAQ NKSEAADIDV TVIQTHVNLK  360
IQCQRRAGQL MKAILALEDL RLAVLHLNIT SSQDTVLYSF NLKIEEGCKL GSADEIARAV  420
HQIFSFINGC S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204RRKRKR
2218229RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894300.0KP689430.1 Prunus pseudocerasus isolate Unigene20562 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244210.10.0PREDICTED: transcription factor bHLH67
TrEMBLM5WZZ70.0M5WZZ7_PRUPE; Uncharacterized protein
STRINGXP_008244210.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-75bHLH family protein