PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008244000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 27440 Da PI: 7.5678 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.7 | 3e-41 | 60 | 159 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdPvyG++gvi++lqqq+++l++el+ XP_008244000.1 60 PCAACKLLRRRCAEECPFSPYFSPHEPQKFSAVHKVFGASNVSKMLIEVAENQRADAANSLVYEANLRLRDPVYGCMGVISNLQQQIQSLHQELN 154 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_008244000.1 155 AVRTE 159 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.595 | 59 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-41 | 60 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSRDRDIITL VEIGKKIRRE SDPSGDDQMG TMSTARHNNS FGLPQGMMMM NNTTLNTITP 60 CAACKLLRRR CAEECPFSPY FSPHEPQKFS AVHKVFGASN VSKMLIEVAE NQRADAANSL 120 VYEANLRLRD PVYGCMGVIS NLQQQIQSLH QELNAVRTEI LRYQYKEATN HMVSSTNIMH 180 HHPSLVSTSG MVSIAGPPQA IPTPPPPPPP PPSSVVFSSS SSSSTSSLYN PSTNTTGYSS 240 MSSDNIPYFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-44 | 53 | 167 | 4 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-44 | 53 | 167 | 4 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008244000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244000.1 | 0.0 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 2e-71 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A251NK43 | 1e-147 | A0A251NK43_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244000.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 1e-67 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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