PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243983.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 813aa    MW: 89545.3 Da    PI: 6.9385
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243983.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-075294347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I  +++  +   q++++++ +
   XP_008243983.1 52 AWTHQEEESFFAALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 94
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.79E-104399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-54697IPR009057Homeodomain-like
PROSITE profilePS5129312.1284899IPR017884SANT domain
SMARTSM007173.5E-44997IPR001005SANT/Myb domain
CDDcd001672.14E-45295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MQIGSTVIVN SEAHPHQGGF FVQDGGPGLA PSTSNHVALQ QPVKKPTRQW AAWTHQEEES  60
FFAALRQVGK NFEKITCRVQ SKNKDQVRHY YYRLVRRMNK LLGPGLYLDS KNSKDTNAAM  120
LRWWSLLEKY SCKASKLHLK PRRFKIFIEA LEHQLLKDRK KSVRKRPSQG ENCPPNAPST  180
LSNQNRPSGH DNRTVKLVLV DSHNIQKLGP GKASLKRNVN IGVNRSNKGD SSTMKPARQR  240
RKPGALSSAA YKKWEKAAIA GVSLVADAAE HLERAITDKE VEQDRSAAGQ SSAVPVGKIL  300
PPLPAFVQNI DAESGINNCM KLKLQLFPID DGTRRALEND KHNPYLELTL STRKKISSVL  360
DHLNRKWGNS NVASGELTLF HYSVQRDNLM GYPRWMQDSI VSAADVYATI GCPPVFRLRY  420
GWFSNAELGS VGLQTPVASC SNQGEHDINE EKRKEQIVDS APISPLSTDN QSADIHKDHL  480
TSTNNSCVLS ALDYQHSQPQ LPERGKPRYN HSLGLTSAEE SNEINGYICV SPNNNFVGDP  540
TEITSWHKKE AGDQSTSRHR GDVDDLRSIT GTALSAGVWA DSLTNISMGD LLSGVSHDLD  600
TNCIDPPVAE GSQCLQQIPF SCDSFDAVIA AHISRQNKMG CQPTMECHVS SIWDAEETCD  660
AFSFQKNSVF CQEVSSLSAV APPGASSVGS DCMVEEISVV ERPIDDPPQG GPTDECQSDP  720
RILESSVKDF NALTDIYWPE SLGPLDLEMP SSKYHSEDFV LSDSLSGLNR LIASSLDAFQ  780
NCSFFGANKR EPTASVEARE TASFSDFKIG NGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243983.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A251NUP70.0A0A251NUP7_PRUPE; Uncharacterized protein
STRINGXP_008243983.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1