PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008243869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21138.5 Da PI: 6.0186 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.1e-19 | 4 | 54 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ + g XP_008243869.1 4 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMSG 54 59*******9.**********8.....334*********************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.93E-35 | 4 | 64 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-20 | 5 | 63 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-41 | 5 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.957 | 5 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-33 | 5 | 62 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 5 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 6 | 17 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010143 | Biological Process | cutin biosynthetic process | ||||
GO:0010166 | Biological Process | wax metabolic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
LQSKKFRGVR QRHWGSWVSE IRHPLLKRRV WLGTFETAEE AARAYDEAAI LMSGRNAKTN 60 FPVLTNEVSN DHNNNNNNSS SSSSSALSAI LSAKLRKCCK SPSPSLTCLR LDTENSHIGV 120 WQKGAGPHSD SNWLMMVELD QKSLQPPQPE TSTSVLDTQE MAAGQDGGDD SMDDEERVAL 180 QMIEELLNRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 2 | 66 | 2 | 67 | ATERF1 |
3gcc_A | 2e-17 | 2 | 66 | 2 | 67 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008243869.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ842596 | 8e-58 | HQ842596.1 Rosa chinensis clone 2 putative AP2 domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008243869.1 | 1e-140 | PREDICTED: ethylene-responsive transcription factor WIN1, partial | ||||
Swissprot | Q9XI33 | 9e-76 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A314YPB2 | 1e-122 | A0A314YPB2_PRUYE; Ethylene-responsive transcription factor WIN1 | ||||
STRING | XP_008243869.1 | 1e-139 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 2e-63 | ERF family protein |