PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243686.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 356aa    MW: 41331.3 Da    PI: 6.1279
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243686.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.12.8e-104895255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl++
  XP_008243686.1 48 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLRN 95
                    789996.566899****999......44**********99*************97 PP
2B391.56.4e-29173267187
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k+ltpsdv+k++rlv+pkk+a e+        +++   +++l+++d+  r+W+++++y+k+s+++v+t+GW++Fvk+n+Lk++D+++F+  ++
  XP_008243686.1 173 FQKELTPSDVGKLNRLVIPKKYAVEYfpcicenvEENGVDDIELVFYDKLMRVWKFRYCYWKSSQSFVFTRGWNRFVKENNLKANDVITFYTCEN 267
                     99*****************************87744444889************************************************96544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.47E-2247106No hitNo description
PROSITE profilePS5103216.89848104IPR001471AP2/ERF domain
PfamPF008471.6E-54895IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1448105IPR016177DNA-binding domain
SMARTSM003801.8E-1748110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-1648104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.2E-33170269IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-28172268IPR015300DNA-binding pseudobarrel domain
CDDcd100175.38E-27172263No hitNo description
PfamPF023623.5E-26173267IPR003340B3 DNA binding domain
PROSITE profilePS5086313.211173279IPR003340B3 DNA binding domain
SMARTSM010193.8E-22173274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEDAASSMI SSVQRNVALE TSDSNDNDFG LLHPNKRARL DNDVSFAKFK GVVPQQNGHW  60
GAQIYANHQR IWLGTFKSEK EAAMAYDSAA IKLRNGKDLH RNFPWTNFTI QEPDFQNHYT  120
TDAIIKMIRD GSYPSKFDAF IRSQKQSQTK EMGKGNNSIR VHGDGKILSR QLFQKELTPS  180
DVGKLNRLVI PKKYAVEYFP CICENVEENG VDDIELVFYD KLMRVWKFRY CYWKSSQSFV  240
FTRGWNRFVK ENNLKANDVI TFYTCENDDQ LREEDRESAT FWLIDVMNSE GESKRSCLLE  300
EEINKHECED LQIKLELNLG ESSSYKFQQG ECKYSEDHKA SMADQKGFRL FGVNIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-3117227013108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243686.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243686.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-106RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A251NIM80.0A0A251NIM8_PRUPE; Uncharacterized protein
STRINGXP_008243686.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-108RAV family protein