PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243303.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 333aa    MW: 37280.8 Da    PI: 7.0649
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243303.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.65.4e-15250275126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++ G+C+yG++C+FaHg
  XP_008243303.1 250 FKTELCNKWQEAGECPYGEQCQFAHG 275
                     79***********************8 PP
2zf-CCCH19.12.4e-06288312125
                     --S---SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                     ykte Cr  ++ G  C+yG rC+F H
  XP_008243303.1 288 YKTEVCRMVLA-GvACPYGHRCHFRH 312
                     9**********.66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-18244282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-10246281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.427249277IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-8249276IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-12250275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-8283317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-11283316IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4287314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803287315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MHNDTASSTA NGGLAISSPF KSQPRSDDAV FSSLYSAIFD RKPSLARYNE SEPDASSNLP  60
HRQLYHSLLV QDHQEMVNRH SRTLKQLHEA SEEADALRRE NIHLRALNLE LNKHLSLLIH  120
ASVQKQFVSP GSVETTPFGI VNRLHGMSID DKRAEEDESD ESPTSVIESE GADAENIDAE  180
RFTLPKSISV RSNGYVKVAQ PGTSTAAGTR VPTRPRTANT FNASQKVYVP TGGMKEQEPL  240
ELEVYNQGMF KTELCNKWQE AGECPYGEQC QFAHGIEELR PVIRHPRYKT EVCRMVLAGV  300
ACPYGHRCHF RHALTENEKF MGPNKPRAMK LAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21250312466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243303.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243302.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_008243303.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-80C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLM5XH060.0M5XH06_PRUPE; Uncharacterized protein
STRINGXP_008243302.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-78C3H family protein