PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008243193.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 464aa MW: 51619.5 Da PI: 6.4183

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008243193.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	6e-10	178	217	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le+ L++ ++ XP_008243193.1 178 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLSQLEQE 217 788*************************976666655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-9	174	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.427	176	220	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-6	178	217	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.36E-22	178	230	No hit	No description
SuperFamily	SSF57959	1.05E-6	178	221	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-7	179	223	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.0E-32	263	336	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MQSFKAASTN PELYSHSSFY FRGDDTNRNQ TRFTDLGELE QSATVFPHDD AVDLIPSSMF 60 SLKANNVAVV PNNLHYGALN TSTGCLDIGS TITGTGGGCV ETGHHQYMYH QQKGTTSSGN 120 GHFENWGDSA MADNSQQTDD TSTDVDTDDK TQLHGVPHGA LTVVDSMEQP RERSGDQKTL 180 RRLAQNREAA RKSRLRKKAY VQQLENSRLR LSQLEQELQR ARQQGMFIAT GLSGDNGHSM 240 SGNGALAFDL EYARWLDEHQ RLIHDMRSAV NSHTGDNELR ILVDSVMTHY DEIFRLKSTA 300 AKTDVFHMLS GMWKTPAERC FMWLGGFRSS ELLKILGNQL EPLTDQQLMG ICNLQQSSQQ 360 AEDALSQGME ALQQSLVDTL SSGTHGPTGS GNVADYMGQM AIAMGKLATL ENFLHQADLL 420 RQQTLQQMHR ILTTRQAARA LLVISDYFSR LRALSSLWLA RPRD

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MQSFKAASTN PELYSHSSFY FRGDDTNRNQ TRFTDLGELE QSATVFPHDD AVDLIPSSMF  60
SLKANNVAVV PNNLHYGALN TSTGCLDIGS TITGTGGGCV ETGHHQYMYH QQKGTTSSGN  120
GHFENWGDSA MADNSQQTDD TSTDVDTDDK TQLHGVPHGA LTVVDSMEQP RERSGDQKTL  180
RRLAQNREAA RKSRLRKKAY VQQLENSRLR LSQLEQELQR ARQQGMFIAT GLSGDNGHSM  240
SGNGALAFDL EYARWLDEHQ RLIHDMRSAV NSHTGDNELR ILVDSVMTHY DEIFRLKSTA  300
AKTDVFHMLS GMWKTPAERC FMWLGGFRSS ELLKILGNQL EPLTDQQLMG ICNLQQSSQQ  360
AEDALSQGME ALQQSLVDTL SSGTHGPTGS GNVADYMGQM AIAMGKLATL ENFLHQADLL  420
RQQTLQQMHR ILTTRQAARA LLVISDYFSR LRALSSLWLA RPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008243193.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008243193.1	0.0	PREDICTED: transcription factor HBP-1b(c38)
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A314YNL2	0.0	A0A314YNL2_PRUYE; Transcription factor HBP-1b(C38)
STRING	XP_008243192.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-158	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]