PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243137.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 533aa    MW: 60287.7 Da    PI: 4.3877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243137.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS133.62.2e-411605302374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL +  ea++ g+ el + +L  lse ++p g++++Rla+ + +    +  +           +++s    ++  aa++lf++  P  +f+h 
  XP_008243137.2 160 RHLLKAYGEAMEMGQRELEEVILRCLSEKVNPLGQSLERLAFNLCQEVDDQQGN---------YLKQES---CKNFEAAFNLFYQSIPEGRFAHY 242
                     78999999*********************************9876655554444.........223333...66777999*************** PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvak 184
                     +aN aIlea+ ++ e+vHi+Dfd+++G+Q   L++a a+R +   +l++T+++   ++       + + eet+++L++ A+++g++++ + ++ k
  XP_008243137.2 243 AANTAILEAIPEDaETVHIVDFDMGEGVQLSQLIEAVAQRHK---TLKVTAIKWDVEEtedgapPQWRFEETKRQLQHHARSFGLNLKVEEIAIK 334
                     **********8777**************************66...5******976555677999999************************9555 PP

            GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl..........sPkvvvvveqe..adh.nsesFlerflealeyys 265
                       +++++  + r   +E la n+++ l ++ +++      + e+++l k+l          +  ++++ + +  a++ n++sF   f   l +y 
  XP_008243137.2 335 dLVSEVKKANKRGGGREFLAFNCMVGLPHMRRRRSR--GLILEFVRLAKDLlassanyktsNRGIITFGDGDacAKLeNGSSFSSFFDGYLAHYQ 427
                     245555555555555*************99833322..234556666555522222222215579*****99755669***************** PP

            GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                     al++s+e+++p++  e+r+++E +++++ +++    ++ + + ++ +l+ W      +G++  +ls +  ++a+ ++ + +  g r+ ++ +++ 
  XP_008243137.2 428 ALLESIESNFPSHLaEARMVIELMFVAPYVSSHALFQKWNEVREECHLQPW------FGLEGKRLSRESLMEANEMVGESS-YGVRIGQNGNEMA 515
                     ***********98779***************99999999988888889999......8********************999.89*********** PP

            GRAS 360 lgWkdrpLvsvSaWr 374
                     l W++ pLv vS W+
  XP_008243137.2 516 LEWEGTPLVRVSTWT 530
                     **************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.658133511IPR005202Transcription factor GRAS
PfamPF035147.5E-39160530IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MMQSELLPPY LNVINSPFDQ FEYNDVNMGS YDFSSPFMAS DEFSETSSFP FATMFSGDFE  60
QLADCDHLLQ VTSSVEEFPM DFGGFEPNYL IGDIEGMYAC LERSEGSTLP SQQFSIEGND  120
VWSPNSLMTS EASSMDVTSI HQSLTLPREE MEIDNELSIR HLLKAYGEAM EMGQRELEEV  180
ILRCLSEKVN PLGQSLERLA FNLCQEVDDQ QGNYLKQESC KNFEAAFNLF YQSIPEGRFA  240
HYAANTAILE AIPEDAETVH IVDFDMGEGV QLSQLIEAVA QRHKTLKVTA IKWDVEETED  300
GAPPQWRFEE TKRQLQHHAR SFGLNLKVEE IAIKDLVSEV KKANKRGGGR EFLAFNCMVG  360
LPHMRRRRSR GLILEFVRLA KDLLASSANY KTSNRGIITF GDGDACAKLE NGSSFSSFFD  420
GYLAHYQALL ESIESNFPSH LAEARMVIEL MFVAPYVSSH ALFQKWNEVR EECHLQPWFG  480
LEGKRLSRES LMEANEMVGE SSYGVRIGQN GNEMALEWEG TPLVRVSTWT TQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-1319352937374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339345VKKANKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243137.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243137.20.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLM5WLS00.0M5WLS0_PRUPE; Uncharacterized protein
STRINGEMJ077650.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-16GRAS family protein