PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242734.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 346aa    MW: 39035.6 Da    PI: 7.2702
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242734.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.9e-1088112126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC +f   G C+ G++C++aHg
  XP_008242734.1  88 YKTRLCVNFKT-GMCRNGENCNYAHG 112
                     9**********.*************8 PP
2zf-CCCH28.42.9e-09151173325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     ++lC+ f+ + +C+yGdrC+F H
  XP_008242734.1 151 MKLCKKFYNGEECPYGDRCNFLH 173
                     689******66************ PP
3zf-CCCH42.21.3e-13232258127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ +  tG C++G++C+FaHg+
  XP_008242734.1 232 WKTKLCNKWETTGKCPFGEKCHFAHGQ 258
                     8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-1385120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-886118IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-787113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.21187114IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-688112IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117148176IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-7151173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-9151174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-17228263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-10230262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488231259IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6231258IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10232258IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNFSDHTQFM PSQTPYAGGS DAVNCWPPFP MSMNNEDQHS QFEQQPSPFK RPRNSEENQS  60
NPMPYPPMNA RMQPPNAPAN KGASNIFYKT RLCVNFKTGM CRNGENCNYA HGIEDIRHPP  120
PNWQELVSVR EEDRPPLSGN WDDDQKIIHR MKLCKKFYNG EECPYGDRCN FLHEDPAKFR  180
DDISRFRENT AISIGTTGPS VVHGSGSNHS EENRLVNTGT DTFRVNMKPV YWKTKLCNKW  240
ETTGKCPFGE KCHFAHGQAE LQVPGGRVEA EVLSSTPIST KTQAGPVNDS STTAMAILPA  300
SNEEGDQGKK RVLKWKGSKK INRIYADWLD DVPLVHQQNL SSTVES
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242734.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242734.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT813e-91C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A314ZJY70.0A0A314ZJY7_PRUYE; Zinc finger CCCH domain-containing protein 39
STRINGXP_008242734.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-93C3H family protein