PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008242703.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 537aa MW: 58969.8 Da PI: 6.0229

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008242703.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	412	5.5e-126	151	511	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lv+lL++cAe v+ gdl+la +l++++++l + ++ + ++a yf AL++r+++ +ps +s e+ +++f+e++P+lkf XP_008242703.1 151 LVHLLVTCAESVQRGDLALAGSLIENMQTLltRVNTSCGIGKVAGYFIDALSRRIFS---------HPSVAS---AHENELLYHYFYEACPYLKF 233 68*************************954444446899***********9.........333333...456667889******* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+rled XP_008242703.1 234 AHFTANQAILEAFQGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVAASRLED 328 ******************************************************************************************* PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++++L+v+p+Ea+aVn+++qlhrll ++ + +s+++ +L +++l+Pk+v+vveqeadhn++ Fl+rf+eal+yys++fdslea + + ++ XP_008242703.1 329 VKPWMLQVSPKEAVAVNSIMQLHRLLGSDPNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKTGFLDRFTEALYYYSTMFDSLEAC---AMQPEK 420 *******************************************************************************999...467777 PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +++++r i+ ++ce a+ +++h+ l+kWr+rl++aGF+p++l+++a kqa++ll ++ +gyrvee++g+l+lgW++rpL+++SaW+ XP_008242703.1 421 ALAEMYIQRXICVGLCCESAAGEQKHKPLGKWRARLGQAGFRPLHLGSNAFKQASMLLTLFSAEGYRVEENDGCLTLGWHSRPLIAASAWQ 511 888899**********************************************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	2.0E-19	32	104	No hit	No description
Pfam	PF12041	1.3E-30	32	98	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	60.73	125	491	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-123	151	511	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MGPYGSTVCS GVSSSASSSS SSSVTKPPAE IDGYLADAGY KVRSSDLRHV AQRLEHLETV 60 MVNSPNNLSQ LASDAVLYNP SDIATWVDSL LSEFNHQPLI SLPSDLDFPD AIINPTDLPN 120 DTWTEPIPPP QQQHNQLTVV TAMEEDSGIR LVHLLVTCAE SVQRGDLALA GSLIENMQTL 180 LTRVNTSCGI GKVAGYFIDA LSRRIFSHPS VASAHENELL YHYFYEACPY LKFAHFTANQ 240 AILEAFQGHD CVHVIDFNLM HGLQWPALIQ ALALRPGGPP LLRLTGIGPP SPDGRDSLRE 300 IGLRLAELAR SVNVRFAFRG VAASRLEDVK PWMLQVSPKE AVAVNSIMQL HRLLGSDPNR 360 NSPIEMMLGW IRNLNPKIVT VVEQEADHNK TGFLDRFTEA LYYYSTMFDS LEACAMQPEK 420 ALAEMYIQRX ICVGLCCESA AGEQKHKPLG KWRARLGQAG FRPLHLGSNA FKQASMLLTL 480 FSAEGYRVEE NDGCLTLGWH SRPLIAASAW QVMPMAEATT ANQPVGVINQ NNNANHV

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MGPYGSTVCS GVSSSASSSS SSSVTKPPAE IDGYLADAGY KVRSSDLRHV AQRLEHLETV  60
MVNSPNNLSQ LASDAVLYNP SDIATWVDSL LSEFNHQPLI SLPSDLDFPD AIINPTDLPN  120
DTWTEPIPPP QQQHNQLTVV TAMEEDSGIR LVHLLVTCAE SVQRGDLALA GSLIENMQTL  180
LTRVNTSCGI GKVAGYFIDA LSRRIFSHPS VASAHENELL YHYFYEACPY LKFAHFTANQ  240
AILEAFQGHD CVHVIDFNLM HGLQWPALIQ ALALRPGGPP LLRLTGIGPP SPDGRDSLRE  300
IGLRLAELAR SVNVRFAFRG VAASRLEDVK PWMLQVSPKE AVAVNSIMQL HRLLGSDPNR  360
NSPIEMMLGW IRNLNPKIVT VVEQEADHNK TGFLDRFTEA LYYYSTMFDS LEACAMQPEK  420
ALAEMYIQRX ICVGLCCESA AGEQKHKPLG KWRARLGQAG FRPLHLGSNA FKQASMLLTL  480
FSAEGYRVEE NDGCLTLGWH SRPLIAASAW QVMPMAEATT ANQPVGVINQ NNNANHV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-62	144	510	12	378	Protein SCARECROW
5b3h_A	2e-62	144	510	11	377	Protein SCARECROW
5b3h_D	2e-62	144	510	11	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008242703.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008242703.1	0.0	PREDICTED: LOW QUALITY PROTEIN: DELLA protein DWARF8-like
Swissprot	Q9LQT8	1e-155	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A1S5WJ09	0.0	A0A1S5WJ09_9ROSA; DELLA protein
STRING	XP_008242703.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF803	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-137	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]