PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008242523.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 30259.2 Da PI: 4.6748 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 63 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g XP_008242523.1 63 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALCIKG 113 68*****998.**********854...59***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-12 | 63 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.077 | 64 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 64 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-36 | 64 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 64 | 121 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.93E-31 | 65 | 121 | No hit | No description |
PRINTS | PR00367 | 4.9E-10 | 65 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MADPTNSETE SGFNSPSSPS PSSSGFSQSL PNSAQNPLPG SSDSPDPDQK RAKRARETSS 60 KHPVYRGVRM RTWGKWVSEI REPRKKNRIW LGTFSTPEMA ARAHDVAALC IKGNSAILNF 120 PGLAGSLPRP ESNSPRDIQT AAAKAASMEI TLNAAPPPSQ SSSPALSQSS SSLSSSSSSS 180 SLVGPTTSST TSGDAGTPEE LSEIVELPSL GTSYESAESG NEFVFVDSVE GWLYPPPWWH 240 NSHFEEEYGY NSIINNIRDD QMLMPEPPAA AECFVDALLW QH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-19 | 55 | 121 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008242523.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732463 | 1e-129 | GU732463.1 Malus x domestica AP2 domain class transcription factor (AP2D39) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008242523.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9LYD3 | 6e-67 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | M5W330 | 1e-158 | M5W330_PRUPE; Uncharacterized protein | ||||
STRING | XP_008242523.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-65 | ERF family protein |
Publications ? help Back to Top | |||
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