PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242454.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 397aa    MW: 43683.7 Da    PI: 7.0402
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242454.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.2e-08141161526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G+Ck Gd C FaHg
  XP_008242454.1 141 ACPDFRK-GHCKKGDACEFAHG 161
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0888125IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5136162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788137163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5140163IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.615171195IPR000571Zinc finger, CCCH-type
SMARTSM0035613171194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MMLGEPHRPN PTVHVPPWLQ LDDPTAEVYS PFPLSGVSVN SEGNANGADY NSPYYLHEAL  60
TTFQRYLPSN ETDPDSDSDI SVRESDSPVD AYSCDHFRMF EFKVRRCARG RSHDWTECPY  120
AHPGEKARRR DPRKYHYSGT ACPDFRKGHC KKGDACEFAH GVFECWLHPA RYRTQPCKDG  180
TSCKRRVCFF AHTPEQLRVL PQQSPRGSNS LSTAESYDGS PLRQAIEAAA SCGKTLPFLS  240
STPEESPEIS PPVSPMTRSL SRSLGSNSVN EMVASLRNLQ LGKVKSLPSS WNVQVGSSGF  300
GSPGSPGFVS PRGSILRPGF CSLPSTPTRV PGRSGIGYLD FCEEGCEEEP AMERVESGRG  360
LRAKMFERLR EENSLGRVES GPSGGAPDVG WVSELVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242454.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242454.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotO821991e-139C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A251NEY30.0A0A251NEY3_PRUPE; Uncharacterized protein
STRINGXP_008242454.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-128C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]