PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242417.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HRT-like
Protein Properties Length: 373aa    MW: 41632.2 Da    PI: 9.5945
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242417.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like58.41.2e-18268298131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCGv  +dGsvC+++Pv+gRKRC++HKGmRi
  XP_008242417.1 268 ICGVDVGDGSVCRTPPVPGRKRCAKHKGMRI 298
                     8*****************************7 PP
2HRT-like57.52.2e-18342372131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCG+il dGs C+r+P++gRKRC eHKG+Ri
  XP_008242417.1 342 ICGFILADGSSCRRHPIQGRKRCDEHKGKRI 372
                     8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGASDLTVVT RLKREDCKRT KHDSHFSNWK ILVGPSDWED YSLGKEGAER YRVHNLPEKE  60
SPGVYELGIA VLRTGLGREI GKLDPDYIVP VYLGQADNVR TRLQQYGRSG AHLGNGCPTG  120
HPSDRVQKGP GLFAEILSRD YPVVYRWAPM ENKSVALKTE TQLLNTFDYA WNTNINGARR  180
PDDVLQKLKM VSSSTTRFVN IAQKLVPFSP KKVGTRIESS ELLSPEDKFS AYANRESHNP  240
LSQVFKLGRS QPRLVLDRIG ITQENTIICG VDVGDGSVCR TPPVPGRKRC AKHKGMRINR  300
STRVGISNST VDSESECSAI SSIEFHDAQI INRDPVESFT SICGFILADG SSCRRHPIQG  360
RKRCDEHKGK RII
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242417.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242417.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A314Z6910.0A0A314Z691_PRUYE; Protein EFFECTOR OF TRANSCRIPTION 2 isoform X1
STRINGXP_008242417.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.17e-91effector of transcription2