PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242210.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 298aa    MW: 33473.1 Da    PI: 4.916
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242210.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed+ l+++++ +G g W+  +++ g++R++k+c++rw++yl
   XP_008242210.1 14 KGAWSAWEDKALANYINTHGEGKWRDLPQRAGLNRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.71.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ ++eE+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ 
   XP_008242210.1  67 RGNISPEEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.536961IPR017930Myb domain
SuperFamilySSF466891.8E-2812108IPR009057Homeodomain-like
SMARTSM007172.3E-121363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
CDDcd001675.60E-91661No hitNo description
PROSITE profilePS5129425.85362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-2565115IPR009057Homeodomain-like
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567112IPR001005SANT/Myb domain
CDDcd001672.02E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRKPCCDKE GLNKGAWSAW EDKALANYIN THGEGKWRDL PQRAGLNRCG KSCRLRWLNY  60
LRPDIKRGNI SPEEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRSEQGS  120
DKAYQDQLSA STSSKDDTKK LNNPASKSSV QVVRTKAFKC RKVAIPSHLD GHDQMLERSN  180
VAPGSDSESP CSSAAQEHDS SFGFLRDFDI NDMLIPDVLS SDFQKAQIND CDQDMLECGI  240
TKIEDLLMGE ARLGEWRAGD DDQDDPLQPN DDDHGDVNGF NALSSFLNSV DDDQWIIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242210.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_016651684.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_016651685.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_016651686.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A314YFB20.0A0A314YFB2_PRUYE; Transcription repressor MYB6-like
STRINGXP_008242210.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1893346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.19e-60MYB family protein