PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242109.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 358aa    MW: 40718.8 Da    PI: 5.8624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242109.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0690113226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC f+ + G+C  G +CkF+H+
  XP_008242109.1  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                     6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.66E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06588115IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-488114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-490114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.61158196IPR000571Zinc finger, CCCH-type
SMARTSM003562158195IPR000571Zinc finger, CCCH-type
PfamPF165438.9E-18215294IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPQSD PSKTAAKKKK  60
EEEKAKDKEL NELFKVAVSQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DHDTMEEWDQ ETLEKVVESK KNEYQQNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKNCH YRHSLPPGYV LKSQMKALLE EEAEKIPIEE EIENQRAKVT TSTPMTTELF  240
MQWKKKKMAE RDAGLEAQMA ERAKNDRMSG RELFLSDSSI FVDDVEAHEK YQRDQEPPVA  300
EQKVSANSNG DRPSDSATAG GGAKVTNDDD DDELDIDELN ELEASLSKVT IQEPDTAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242109.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ21e-176C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLM5WBL20.0M5WBL2_PRUPE; Uncharacterized protein
STRINGXP_008242109.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-156C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]